View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_low_22 (Length: 366)

Name: NF17326_low_22
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_low_22
NF17326_low_22
[»] chr4 (3 HSPs)
chr4 (19-363)||(29422348-29422693)
chr4 (59-150)||(29458303-29458394)
chr4 (268-363)||(29458583-29458677)
[»] chr6 (2 HSPs)
chr6 (268-318)||(6346930-6346980)
chr6 (269-318)||(6331668-6331717)
[»] chr5 (2 HSPs)
chr5 (268-318)||(30655248-30655298)
chr5 (268-312)||(14416665-14416709)
[»] chr2 (2 HSPs)
chr2 (269-319)||(7732224-7732274)
chr2 (269-317)||(32265917-32265965)
[»] chr3 (1 HSPs)
chr3 (269-317)||(24993328-24993376)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 29422348 - 29422693
Alignment:
Q  19 tgtttacaacagaaaatctagatggtgattagtgaaaggaatattcaatttttattgctgtttatcccaatagaattagctaaaattgttttatagagat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29422348 tgtttacaacagaaaatctagatggtgattagtgaaaggaatattcaatttttattgctgtttatcccaatagaattaactaaaattgttttatagagat 29422447  T
Q  119 tggttgcgaattagctactaaatagtaacactctttgaatgttactaataata--ctcaggggttactgaaactactcagtaacacaggtgacaggcttt 216  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||    
T  29422448 tggttgtgaattagctactaaatggtaacactctttgaatgttactaataatactctcaggggttactgaaactactcagtaacacagtcgacaggcttt 29422547  T
Q  217 acctaacaaatgataaatgttactagatctaaaaggtaacannnnnnnnnngatttagtaacacttttaaaatgttactaaatctcatatatgttgcagt 316  Q
    ||||||||||||| |||||||||||||||||||| ||||||           ||||||||||||||||||||||||||| ||||||||||||| |||||     
T  29422548 acctaacaaatgacaaatgttactagatctaaaaagtaacatttttttttt-atttagtaacacttttaaaatgttactgaatctcatatatgctgcaga 29422646  T
Q  317 gttccattaatatcgaatgttcttctcatttgtcatgactttgctga 363  Q
    |||||||||| || ||||||||||| |||||||||||||||||||||    
T  29422647 gttccattaaaattgaatgttcttcccatttgtcatgactttgctga 29422693  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 29458303 - 29458394
Alignment:
Q  59 atattcaatttttattgctgtttatcccaatagaattagctaaaattgttttatagagattggttgcgaattagctactaaatagtaacact 150  Q
    ||||||||| ||| ||| |||||||||||| | ||||||||||||||||||| |||||| |||||||||||||| |||||||  ||||||||    
T  29458303 atattcaatctttgttgttgtttatcccaacaaaattagctaaaattgttttctagagaatggttgcgaattagttactaaacggtaacact 29458394  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 363
Target Start/End: Original strand, 29458583 - 29458677
Alignment:
Q  268 gatttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgttccattaatatcgaatgttcttctcatttgtcatgactttgctga 363  Q
    |||||||||| |||| | ||||| || ||||||||||| |||||| || ||||||||||||||  |||||||| |||||||| |||||||| ||||    
T  29458583 gatttagtaagacttctcaaatgcta-taaatctcatagatgttgtagggttccattaatatctgatgttcttttcatttgttatgacttttctga 29458677  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 6346930 - 6346980
Alignment:
Q  268 gatttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgt 318  Q
    |||||||| ||| ||||||  ||||||||||||||||||||||||||||||    
T  6346930 gatttagttacaattttaatgtgttactaaatctcatatatgttgcagtgt 6346980  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 6331668 - 6331717
Alignment:
Q  269 atttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgt 318  Q
    ||||||| |||  |||||| |||||||||||||||||||||||| |||||    
T  6331668 atttagttacaactttaaagtgttactaaatctcatatatgttgtagtgt 6331717  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 30655248 - 30655298
Alignment:
Q  268 gatttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgt 318  Q
    |||||||| ||| |||| || |||||||||||||||||||||||| |||||    
T  30655248 gatttagttacaattttgaagtgttactaaatctcatatatgttgtagtgt 30655298  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 14416709 - 14416665
Alignment:
Q  268 gatttagtaacacttttaaaatgttactaaatctcatatatgttg 312  Q
    |||||||| |||  |||||| ||||||||||||||||||||||||    
T  14416709 gatttagttacaaatttaaagtgttactaaatctcatatatgttg 14416665  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 7732274 - 7732224
Alignment:
Q  269 atttagtaacacttttaaaatgttactaaatctcatatatgttgcagtgtt 319  Q
    ||||| ||||| |||| || |||||||||||||||||||||||| ||||||    
T  7732274 atttactaacatttttcaagtgttactaaatctcatatatgttgtagtgtt 7732224  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 32265965 - 32265917
Alignment:
Q  269 atttagtaacacttttaaaatgttactaaatctcatatatgttgcagtg 317  Q
    ||||||| ||| |||| || |||||||||||||||||||||||| ||||    
T  32265965 atttagttacaattttgaactgttactaaatctcatatatgttgtagtg 32265917  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 24993376 - 24993328
Alignment:
Q  269 atttagtaacacttttaaaatgttactaaatctcatatatgttgcagtg 317  Q
    ||||||| ||| |||| || |||||||||||||||||||||||| ||||    
T  24993376 atttagttacaattttgaagtgttactaaatctcatatatgttgtagtg 24993328  T

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