View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_23 (Length: 361)
Name: NF17326_low_23
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 40543213 - 40542883
Alignment:
| Q |
13 |
aaaattcttgatcatcaatacctttgtttggaataaaactacgttgacaagaccaataagattcttcaaatggggtctaattcttcaaaccataaccttt |
112 |
Q |
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| T |
40543213 |
aaaattcttgatcatcaataccattgtttggaataaaactacgttgacaagaccaataagattcttcaaatggggtctaattcttcaaaccataaccttt |
40543114 |
T |
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| Q |
113 |
gagataagcttgagaagaatgttataaaggataatcgtcctaaaggccatcaaactttgaggtttattactcttaggaattggaacaataagagtctatg |
212 |
Q |
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| T |
40543113 |
gagataagcttgagaagaatgttataaaggatagtcgtcctaaaggccatcaaactttgaggtttattactcttaggaattggaacaataagagtctatg |
40543014 |
T |
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| Q |
213 |
tcaacttaggagggataataccaatattaaaacactccaaaacaagctttcaaacaatataactccctacgatctacatatatataagaagtaaaatggg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40543013 |
tcaacttaggagggataataccaatattaaaacactccaaaacaagctttcaaacaatataactccctacgatctacatatatataagaagtaaaatggg |
40542914 |
T |
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| Q |
313 |
ttgaaatccatcaagatctagagctttatagg |
344 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
40542913 |
ttgaaat-catcaagatctagagctttatagg |
40542883 |
T |
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