View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_low_24 (Length: 357)

Name: NF17326_low_24
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_low_24
NF17326_low_24
[»] chr8 (3 HSPs)
chr8 (14-339)||(32144666-32144987)
chr8 (245-316)||(6501488-6501559)
chr8 (258-306)||(29096952-29097000)
[»] chr1 (5 HSPs)
chr1 (257-314)||(31667430-31667487)
chr1 (245-306)||(26462650-26462711)
chr1 (287-316)||(50195460-50195489)
chr1 (263-311)||(264615-264663)
chr1 (260-316)||(19637776-19637832)
[»] chr6 (3 HSPs)
chr6 (253-306)||(27661737-27661790)
chr6 (246-311)||(2468472-2468538)
chr6 (253-305)||(29449682-29449734)
[»] chr5 (5 HSPs)
chr5 (251-303)||(29365005-29365057)
chr5 (284-317)||(10948652-10948685)
chr5 (262-315)||(32932228-32932281)
chr5 (259-303)||(30267531-30267575)
chr5 (245-309)||(35972032-35972096)
[»] chr4 (2 HSPs)
chr4 (284-320)||(47665849-47665885)
chr4 (246-311)||(27131672-27131738)
[»] chr3 (2 HSPs)
chr3 (252-311)||(8091412-8091471)
chr3 (252-316)||(1502574-1502638)
[»] scaffold0011 (1 HSPs)
scaffold0011 (260-310)||(240022-240072)
[»] chr2 (2 HSPs)
chr2 (260-309)||(18622423-18622472)
chr2 (244-309)||(39459776-39459841)
[»] chr7 (1 HSPs)
chr7 (263-307)||(43160495-43160539)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 32144987 - 32144666
Alignment:
Q  14 atatctctagcaccaaagaagtttactctggacaaaagaacctaattcaatgtcacacaaaatgcatgagaaaatttatcacaataatgaatataataaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32144987 atatctctagcaccaaagaagtttactctggacaaaagaacctaattcaatgtcacacaaaatgcatgagaaaattcatcacaataatgaatataataaa 32144888  T
Q  114 ggtttagttacattttgagtgtgtgatttttgtctcccagttatgtttagctcaaaactatttcttgaagtttttattctatgaaacagtgacatagaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32144887 ggtttagttacattttgagtgtgtgatttttgtctcccagttatgtttagctcaaaactatttcttgaagtttttattctatgaaacagtgacatagaaa 32144788  T
Q  214 tagtcattgaacaaacatgccactgactcaaacacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcgga 313  Q
    |||||||||    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32144787 tagtcattg----aacatgccactgactcaaacacgttggcattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcgga 32144692  T
Q  314 caccggatgcacttttaatttgtagt 339  Q
    ||||||||||||||||||||||||||    
T  32144691 caccggatgcacttttaatttgtagt 32144666  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 6501488 - 6501559
Alignment:
Q  245 acacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacac 316  Q
    ||||||||||| |||||||||||| ||| |||   ||| |||||||||| |||||||||||||||| |||||    
T  6501488 acacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgtcggtgtcagacac 6501559  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 29096952 - 29097000
Alignment:
Q  258 ggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcgg 306  Q
    ||||||||||||||||||||   || || ||||||||||||||||||||    
T  29096952 ggtaataatttaagaaaataaattaattgaatgtaatcacatgtgtcgg 29097000  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 31667430 - 31667487
Alignment:
Q  257 tggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggac 314  Q
    |||||||||||| |||||||   ||| |||||||||||||||||||||||||||||||    
T  31667430 tggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtcggac 31667487  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 26462711 - 26462650
Alignment:
Q  245 acacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcgg 306  Q
    |||||| |||| || |||||||||||||||||   ||| || ||||||||||||||||||||    
T  26462711 acacgtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgtcgg 26462650  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 316
Target Start/End: Complemental strand, 50195489 - 50195460
Alignment:
Q  287 aatgtaatcacatgtgtcggtgtcggacac 316  Q
    ||||||||||||||||||||||||||||||    
T  50195489 aatgtaatcacatgtgtcggtgtcggacac 50195460  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 264615 - 264663
Alignment:
Q  263 taatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcg 311  Q
    |||||||||||| ||  ||| |||||||||||||||||||| |||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcg 264663  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 19637776 - 19637832
Alignment:
Q  260 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacac 316  Q
    |||||||||||||||||   ||  || |||||||||| |||||||||||||||||||    
T  19637776 taataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac 19637832  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 27661737 - 27661790
Alignment:
Q  253 acattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcgg 306  Q
    |||||| || ||||||||||||||| |||| || ||||||||||||||||||||    
T  27661737 acattgatagtaatttaagaaaataatatatttcaatgtaatcacatgtgtcgg 27661790  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 2468538 - 2468472
Alignment:
Q  246 cacgttgacattggtaataatttaagaaaatagta-tagttaaatgtaatcacatgtgtcggtgtcg 311  Q
    ||||| ||||||||||||||||||||||||| | | || || ||||||| ||||||||| |||||||    
T  2468538 cacgtagacattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 2468472  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 29449682 - 29449734
Alignment:
Q  253 acattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcg 305  Q
    ||||||||| |||||| ||||||||  ||| || |||||||||||||||||||    
T  29449682 acattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcg 29449734  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 29365005 - 29365057
Alignment:
Q  251 tgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgt 303  Q
    ||||| ||| |||||||||||||||| ||||| ||||||||||||||| ||||    
T  29365005 tgacaatggcaataatttaagaaaatggtataattaaatgtaatcacaggtgt 29365057  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 10948685 - 10948652
Alignment:
Q  284 ttaaatgtaatcacatgtgtcggtgtcggacacc 317  Q
    |||||||||||||||||||||||||| |||||||    
T  10948685 ttaaatgtaatcacatgtgtcggtgttggacacc 10948652  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 32932281 - 32932228
Alignment:
Q  262 ataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggaca 315  Q
    ||||||| |||||||| |||| |  ||||||||||||||||||||||| |||||    
T  32932281 ataattttagaaaataatataatccaatgtaatcacatgtgtcggtgttggaca 32932228  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 30267575 - 30267531
Alignment:
Q  259 gtaataatttaagaaaatagtatagttaaatgtaatcacatgtgt 303  Q
    |||||||||| |||||||| |||| ||||||||||||||| ||||    
T  30267575 gtaataatttgagaaaataatataattaaatgtaatcacaagtgt 30267531  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 35972096 - 35972032
Alignment:
Q  245 acacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgt 309  Q
    |||||||||  || |||||||||||| ||||||| ||| || |||||||||||||| ||| ||||    
T  35972096 acacgttgattttagtaataatttaataaaatagaataattgaatgtaatcacatgagtcagtgt 35972032  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 47665885 - 47665849
Alignment:
Q  284 ttaaatgtaatcacatgtgtcggtgtcggacaccgga 320  Q
    |||||||||||||||||||||||||| ||||||||||    
T  47665885 ttaaatgtaatcacatgtgtcggtgttggacaccgga 47665849  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 27131738 - 27131672
Alignment:
Q  246 cacgttgacattggtaataatttaagaaaatagta-tagttaaatgtaatcacatgtgtcggtgtcg 311  Q
    ||||| ||||||||||||||||||||||||| | | || || ||||||| ||||||||| |||||||    
T  27131738 cacgtagacattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 27131672  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 8091471 - 8091412
Alignment:
Q  252 gacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcg 311  Q
    |||| |||||||||||||||||||||| ||  || |||||||| |||||||||| |||||    
T  8091471 gacactggtaataatttaagaaaataggattattgaatgtaattacatgtgtcgatgtcg 8091412  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 1502574 - 1502638
Alignment:
Q  252 gacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacac 316  Q
    |||| |||||||||| |||||||||   ||| || |||||||||||||||||| |||| ||||||    
T  1502574 gacactggtaataatctaagaaaatgacataattgaatgtaatcacatgtgtctgtgttggacac 1502638  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 240072 - 240022
Alignment:
Q  260 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtc 310  Q
    ||||||||| |||||||| |||| || |||||||||| |||||||||||||    
T  240072 taataatttgagaaaataatataattcaatgtaatcatatgtgtcggtgtc 240022  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 18622423 - 18622472
Alignment:
Q  260 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgt 309  Q
    |||||||||||||||||   ||| ||||||| ||||||||||||||||||    
T  18622423 taataatttaagaaaatgacataattaaatgcaatcacatgtgtcggtgt 18622472  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 39459776 - 39459841
Alignment:
Q  244 aacacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgt 309  Q
    ||||||| |||||||||||||||||||| ||||    || || |||||||||||| ||||||||||    
T  39459776 aacacgtcgacattggtaataatttaaggaaatgaattaattgaatgtaatcacacgtgtcggtgt 39459841  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 43160495 - 43160539
Alignment:
Q  263 taatttaagaaaatagtatagttaaatgtaatcacatgtgtcggt 307  Q
    |||||||||||||||  ||| || |||||||||||||||||||||    
T  43160495 taatttaagaaaataacataattgaatgtaatcacatgtgtcggt 43160539  T

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