View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_low_25 (Length: 350)

Name: NF17326_low_25
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_low_25
NF17326_low_25
[»] chr8 (20 HSPs)
chr8 (244-350)||(17124215-17124321)
chr8 (79-161)||(13557135-13557217)
chr8 (84-162)||(31933560-31933638)
chr8 (244-349)||(25261230-25261334)
chr8 (84-171)||(13557419-13557506)
chr8 (30-83)||(17124171-17124224)
chr8 (84-171)||(31933273-31933360)
chr8 (84-171)||(36194627-36194714)
chr8 (84-150)||(18847367-18847432)
chr8 (84-153)||(18847632-18847701)
chr8 (88-150)||(12655002-12655064)
chr8 (86-161)||(12654703-12654778)
chr8 (309-350)||(17984787-17984828)
chr8 (84-151)||(36194927-36194994)
chr8 (107-151)||(15271803-15271847)
chr8 (172-243)||(18847630-18847701)
chr8 (173-228)||(31933568-31933623)
chr8 (294-350)||(24555067-24555121)
chr8 (177-245)||(13557138-13557206)
chr8 (169-225)||(36194645-36194701)
[»] chr7 (23 HSPs)
chr7 (84-171)||(6000479-6000566)
chr7 (84-171)||(4133117-4133204)
chr7 (83-171)||(43392297-43392385)
chr7 (84-150)||(25731918-25731984)
chr7 (86-171)||(6000727-6000812)
chr7 (253-342)||(16088309-16088398)
chr7 (251-350)||(16195033-16195132)
chr7 (294-350)||(20146641-20146697)
chr7 (177-243)||(4133138-4133204)
chr7 (173-243)||(6000479-6000549)
chr7 (81-171)||(18417496-18417586)
chr7 (97-150)||(7685228-7685281)
chr7 (251-350)||(11677194-11677295)
chr7 (86-150)||(16833457-16833521)
chr7 (99-151)||(32871908-32871960)
chr7 (85-150)||(32389743-32389809)
chr7 (173-234)||(6000744-6000805)
chr7 (87-126)||(32389560-32389599)
chr7 (169-212)||(32389735-32389778)
chr7 (177-244)||(43392297-43392364)
chr7 (172-230)||(16833468-16833526)
chr7 (107-153)||(37691718-37691764)
chr7 (85-150)||(38085152-38085217)
[»] chr1 (33 HSPs)
chr1 (84-171)||(10394130-10394217)
chr1 (84-171)||(39277862-39277949)
chr1 (84-148)||(47422164-47422228)
chr1 (83-150)||(28990298-28990365)
chr1 (84-150)||(19920505-19920571)
chr1 (87-171)||(39277585-39277669)
chr1 (84-150)||(47421891-47421957)
chr1 (82-171)||(45823067-45823156)
chr1 (84-171)||(28990578-28990665)
chr1 (83-150)||(36077155-36077222)
chr1 (88-150)||(27334349-27334411)
chr1 (72-153)||(30049903-30049984)
chr1 (173-234)||(39277591-39277652)
chr1 (84-153)||(45822787-45822856)
chr1 (84-171)||(36076885-36076972)
chr1 (173-243)||(45822787-45822857)
chr1 (84-150)||(49186000-49186066)
chr1 (102-170)||(15158341-15158409)
chr1 (85-153)||(30050213-30050281)
chr1 (85-171)||(10394410-10394496)
chr1 (85-151)||(16959138-16959204)
chr1 (173-243)||(39277879-39277949)
chr1 (105-153)||(7714193-7714241)
chr1 (103-171)||(16958861-16958929)
chr1 (177-232)||(28990599-28990654)
chr1 (177-243)||(10394130-10394196)
chr1 (169-243)||(47422154-47422228)
chr1 (173-246)||(45823084-45823157)
chr1 (169-234)||(47421900-47421965)
chr1 (177-244)||(28990298-28990365)
chr1 (169-244)||(36077147-36077222)
chr1 (177-243)||(19920505-19920571)
chr1 (84-150)||(52285353-52285419)
[»] scaffold0111 (2 HSPs)
scaffold0111 (251-350)||(35651-35750)
scaffold0111 (294-350)||(28280-28336)
[»] chr4 (25 HSPs)
chr4 (83-161)||(24039249-24039327)
chr4 (83-171)||(36215648-36215736)
chr4 (86-153)||(1113212-1113279)
chr4 (84-171)||(24039529-24039616)
chr4 (84-153)||(55620193-55620262)
chr4 (84-153)||(55627497-55627566)
chr4 (84-171)||(17254726-17254813)
chr4 (86-150)||(8607778-8607842)
chr4 (83-150)||(1113478-1113545)
chr4 (254-350)||(9246973-9247075)
chr4 (84-150)||(48018610-48018676)
chr4 (177-244)||(36215648-36215715)
chr4 (177-243)||(17254747-17254813)
chr4 (169-234)||(1113219-1113284)
chr4 (99-150)||(29430206-29430257)
chr4 (87-154)||(55561022-55561089)
chr4 (169-228)||(55620208-55620267)
chr4 (169-228)||(55627512-55627571)
chr4 (177-234)||(8607785-8607842)
chr4 (87-171)||(29429942-29430024)
chr4 (251-334)||(31933236-31933320)
chr4 (169-244)||(1113470-1113545)
chr4 (174-232)||(24039261-24039319)
chr4 (177-243)||(24039550-24039616)
chr4 (294-335)||(9219624-9219665)
[»] chr2 (12 HSPs)
chr2 (83-171)||(12261104-12261192)
chr2 (84-171)||(12701927-12702014)
chr2 (84-171)||(21304328-21304415)
chr2 (84-171)||(12702206-12702293)
chr2 (251-348)||(34137918-34138017)
chr2 (294-350)||(20718771-20718826)
chr2 (84-150)||(2217622-2217688)
chr2 (84-150)||(2217908-2217973)
chr2 (177-243)||(12701927-12701993)
chr2 (254-340)||(18928161-18928250)
chr2 (87-160)||(3568554-3568627)
chr2 (244-332)||(21651764-21651855)
[»] chr3 (21 HSPs)
chr3 (84-171)||(11047258-11047345)
chr3 (81-153)||(49220380-49220452)
chr3 (84-171)||(52856976-52857063)
chr3 (84-150)||(28253741-28253807)
chr3 (84-153)||(49220114-49220183)
chr3 (79-171)||(26988800-26988892)
chr3 (84-135)||(11046927-11046978)
chr3 (244-350)||(40355532-40355638)
chr3 (251-348)||(15855256-15855353)
chr3 (87-160)||(28253446-28253519)
chr3 (169-234)||(49220375-49220440)
chr3 (84-150)||(31070949-31071015)
chr3 (177-243)||(52856976-52857042)
chr3 (84-150)||(31071215-31071281)
chr3 (294-348)||(19707349-19707405)
chr3 (263-334)||(27049285-27049357)
chr3 (177-232)||(11047279-11047334)
chr3 (177-243)||(26988805-26988871)
chr3 (260-335)||(38278755-38278832)
chr3 (106-150)||(11046990-11047034)
chr3 (171-243)||(28253735-28253807)
[»] chr6 (8 HSPs)
chr6 (263-350)||(16166046-16166135)
chr6 (251-350)||(23292530-23292628)
chr6 (98-150)||(1211696-1211748)
chr6 (277-334)||(14352265-14352323)
chr6 (87-150)||(1211397-1211460)
chr6 (305-350)||(12478791-12478836)
chr6 (294-332)||(12484386-12484424)
chr6 (294-350)||(17907826-17907880)
[»] chr5 (7 HSPs)
chr5 (86-150)||(8417561-8417625)
chr5 (87-150)||(18968803-18968866)
chr5 (84-151)||(36207476-36207544)
chr5 (87-150)||(9989959-9990021)
chr5 (314-349)||(20846869-20846904)
chr5 (84-134)||(18968509-18968559)
chr5 (298-350)||(37277490-37277541)
[»] scaffold0115 (1 HSPs)
scaffold0115 (294-350)||(41698-41753)
[»] scaffold0130 (3 HSPs)
scaffold0130 (82-132)||(25311-25361)
scaffold0130 (87-149)||(25555-25617)
scaffold0130 (178-233)||(25555-25610)
[»] scaffold0097 (1 HSPs)
scaffold0097 (294-350)||(22608-22663)
[»] scaffold0135 (1 HSPs)
scaffold0135 (294-335)||(30275-30316)
[»] scaffold0024 (1 HSPs)
scaffold0024 (298-339)||(64120-64161)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 244 - 350
Target Start/End: Original strand, 17124215 - 17124321
Alignment:
Q  244 ataatataatcatataaaagatttagaagatatttcttctataagctcacacatgcataattaatttttcaaaacatcgcagcagaataatatcataaca 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17124215 ataatataatcatataaaagatttagaagatatttcttctataagttcacacatgcataattaatttttcaaaacattgcagcagaataatatcataaca 17124314  T
Q  344 tctcatc 350  Q
    |||||||    
T  17124315 tctcatc 17124321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 13557135 - 13557217
Alignment:
Q  79 ataatggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttag 161  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||||    
T  13557135 ataatggcttaaatgttcaatcggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaggttcgtttag 13557217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 31933638 - 31933560
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttaga 162  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  31933638 ggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagtccatttaga 31933560  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 25261230 - 25261334
Alignment:
Q  244 ataatataatcatataaaagatttagaagatatttcttctataagctcacacatgcataattaatttttcaaaacatcgcagcagaataatatcataaca 343  Q
    |||||| ||||||| ||| |||||||| | || |||||||||||  ||| |||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  25261230 ataatacaatcatacaaaggatttagatgctacttcttctataaattcaaacatgcatgattaatttt-caaaacatcacagcagaataatatcataaca 25261328  T
Q  344 tctcat 349  Q
    ||||||    
T  25261329 tctcat 25261334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 13557506 - 13557419
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| || | |||||  ||||||||    
T  13557506 ggcttaaatgttcaactggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaac 13557419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 17124171 - 17124224
Alignment:
Q  30 gtgtgatgtaacatcctaaacccttaaaacaataaaacatataaataatataat 83  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17124171 gtgtgatgtaacaccctaaacccttaaaacaataaaacatataaataatataat 17124224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 31933273 - 31933360
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||| ||  |||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||  ||||||| ||||||||    
T  31933273 ggcttaaatgttcttttggtcccttaatttgattttaagtattggtttggtcccataagtaataaaaggtctatttagatcccttaac 31933360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 36194627 - 36194714
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||||  || ||||||||| |||||||||||||||| ||||||| |||||||||||||||||   |||||| ||||||||    
T  36194627 ggcttaaatgctcttttagtcccttaacttgatttcaagtatcgttttggtcccataagtaataaaaagtctgtttagatcccttaac 36194714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 18847367 - 18847432
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||||||    
T  18847367 ggcttaaatgctcaattggtcccttaacttgatttcaagtatc-gattggtctcataagtaataaaa 18847432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 18847701 - 18847632
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    |||||||||||| |||| ||||||||| ||||||||||||||| |||| ||| |||||||||||||||||    
T  18847701 ggcttaaatgcttaattagtcccttaacttgatttcaagtatcagttttgtcccataagtaataaaaagt 18847632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 12655064 - 12655002
Alignment:
Q  88 taaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||  ||| |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  12655064 taaatgctcttttgatcccttaacttgatttcaagtatcggtttggtcccataagtaataaaa 12655002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 12654703 - 12654778
Alignment:
Q  86 cttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttag 161  Q
    |||||||||||  |||||||||||| || ||||||||| ||||||||||| ||||| |||||||| || |||||||    
T  12654703 cttaaatgctcttttggtcccttaactttatttcaagtgtcggtttggtcccataaataataaaaggtccatttag 12654778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 17984828 - 17984787
Alignment:
Q  309 ttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  17984828 ttttcaaaacatcgcagcagaataatatcataatatctcatc 17984787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 36194994 - 36194927
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaa 151  Q
    |||||||||||||  || ||||||||| ||||||| |||||||||||||||| ||||| |||| ||||    
T  36194994 ggcttaaatgctcttttagtcccttaacttgattttaagtatcggtttggtcccataaataatcaaaa 36194927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 15271847 - 15271803
Alignment:
Q  107 ttaatttgatttcaagtatcggtttggtcacataagtaataaaaa 151  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||    
T  15271847 ttaatttaatttcaaatatcgatttggtcacataagtaataaaaa 15271803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 18847630 - 18847701
Alignment:
Q  172 agactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    |||||||||||||||||| |||  ||||| ||||||||||| |||||| ||||| |||| |||  |||||||    
T  18847630 agactttttattacttatgggacaaaactgatacttgaaatcaagttaagggactaattaagcatttaagcc 18847701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 31933568 - 31933623
Alignment:
Q  173 gactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaa 228  Q
    ||||||||||||||||| ||| |||||  ||||||||||| |||||| ||||||||    
T  31933568 gactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaa 31933623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 24555121 - 24555067
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    ||||||||| | || ||||| |||||||||||||||||||||  |||||||||||||    
T  24555121 acatgcatattaaaattttccaaacatcgcagcagaataata--ataacatctcatc 24555067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 13557206 - 13557138
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagccat 245  Q
    ||||||||||||| ||| |||||  ||||||||||| |||||| |||||| ||||| |  |||||||||    
T  13557206 ttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccgattgaacatttaagccat 13557138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 36194701 - 36194645
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaattaagttatgggac 225  Q
    ||||||||||||||||||||| ||| ||||   ||||||||||| |||||| |||||    
T  36194701 aacagactttttattacttatgggaccaaaacgatacttgaaatcaagttaagggac 36194645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 6000479 - 6000566
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||    
T  6000479 ggcttaaatgctcaattggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagtccatttaggtcccttaac 6000566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 4133204 - 4133117
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||||||| || | |||||  ||||||||    
T  4133204 ggcttaaatgctcaattggtcccttaacttgatttcaagtattggtttgatctcataagtaataaaatgtccgtttaggtcccttaac 4133117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 43392297 - 43392385
Alignment:
Q  83 tggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| || ||||| || | |||||  ||||||||    
T  43392297 tggcttaaatgctcaattggtcccttaacttgatttcaagtattggtttggtcccataaatattaaaaggtccgtttaggtcccttaac 43392385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 25731918 - 25731984
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  25731918 ggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttagtcccataagtaataaaa 25731984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 6000812 - 6000727
Alignment:
Q  86 cttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||||||  ||||||||||| |||||||||||| ||||||||  |||||||||||||||| | |||||  ||||||||    
T  6000812 cttaaatgctcaattaatcccttaatttaatttcaagtatcagtttggtcctataagtaataaaaagtccgtttaggtcccttaac 6000727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 16088309 - 16088398
Alignment:
Q  253 tcatataaaagatttagaagatatttcttctataagctcacacatgcataattaatttttcaaaacatcgcagcagaataatatcataac 342  Q
    ||||| || ||||||||| | || | |||||||||| | | |||||||| |||||||||||||||||||||||| |||||||||||||||    
T  16088309 tcatacaacagatttagatgctactacttctataagtttaaacatgcatcattaatttttcaaaacatcgcagcggaataatatcataac 16088398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 16195033 - 16195132
Alignment:
Q  251 aatcatataaaagatttagaagatatttcttctataagctcacacatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    ||||||| ||| |||||||| | || ||||||||||||  |  | |||||||| |||||||||||||||||||| | |||||||||||||| ||||||||    
T  16195033 aatcatacaaatgatttagatgctagttcttctataagtcctaatatgcataaataatttttcaaaacatcgcaacggaataatatcataatatctcatc 16195132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 20146641 - 20146697
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||||||||||||||    
T  20146641 acatgcataattgatttttcaaaacattgcagcgaaataatatcataacatctcatc 20146697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 4133138 - 4133204
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    |||||||||||||  |||||||| |||||||||||| |||||| ||||||||||||||  |||||||    
T  4133138 ttttattacttatgagatcaaaccaatacttgaaatcaagttaagggaccaattgagcatttaagcc 4133204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 6000549 - 6000479
Alignment:
Q  173 gactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||||||||||||||| ||| |||||  ||||||||||| |||||| ||||||||||||||  |||||||    
T  6000549 gactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaattgagcatttaagcc 6000479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 18417586 - 18417496
Alignment:
Q  81 aatggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||||||   |||||||||||| || |||||||||||||||||| ||  |||| |||||||| || |||||||  ||||||||    
T  18417586 aatggcttaaatgcttttttggtcccttaactttatttcaagtatcggtttgatcctataaataataaaaggtccatttaggtcccttaac 18417496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 7685228 - 7685281
Alignment:
Q  97 aattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||||||||||||||||||||||||||||  ||  |||||||||||||    
T  7685228 aattggtcccttaatttgatttcaagtatcggtttaatcttataagtaataaaa 7685281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 11677194 - 11677295
Alignment:
Q  251 aatcatataaaagatttagaagatatttcttctataagctcaca-catgcataattaatttttcaaaacatcgcagcagaataata-tcataacatctca 348  Q
    |||||||||||  ||||||| | || |||||||| ||| ||| | ||||||||| |||||||| ||||||||||| |||||||||| | |||||||||||    
T  11677194 aatcatataaagaatttagatgttacttcttctacaagttcaaatcatgcataaataattttttaaaacatcgcatcagaataatagttataacatctca 11677293  T
Q  349 tc 350  Q
    ||    
T  11677294 tc 11677295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 16833457 - 16833521
Alignment:
Q  86 cttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||| | ||||| |||||||| |||||||||||||| |||||||||  |||||||||||||    
T  16833457 cttaaatgtttaattgatcccttaacttgatttcaagtattggtttggtcctataagtaataaaa 16833521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 32871960 - 32871908
Alignment:
Q  99 ttggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaa 151  Q
    |||||| |||||||||||||||||||||| ||||||| ||||| |||||||||    
T  32871960 ttggtctcttaatttgatttcaagtatcgatttggtcccataaataataaaaa 32871908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 32389809 - 32389743
Alignment:
Q  85 gcttaaatgctcaattggtcccttaa-tttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||| ||||||||||| || | |||||||||||||||| ||||||||  |||||||||||||    
T  32389809 gcttaaatgttcaattggtcctttgactttgatttcaagtatcagtttggtccaataagtaataaaa 32389743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 6000744 - 6000805
Alignment:
Q  173 gactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagc 234  Q
    ||||||||||||||||| ||| |||||| |||||||||||||| ||| ||||  ||||||||    
T  6000744 gactttttattacttataggaccaaactgatacttgaaattaaattaagggattaattgagc 6000805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 32389560 - 32389599
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatc 126  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  32389560 ttaaatgctcaattagtcccttaatttaatttcaagtatc 32389599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 32389735 - 32389778
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaat 212  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||    
T  32389735 aacagacattttattacttattggaccaaactgatacttgaaat 32389778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 43392364 - 43392297
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcca 244  Q
    ||||| || |||| ||| ||||| |||||||||||| |||||| ||||||||||||||  ||||||||    
T  43392364 ttttaatatttatgggaccaaaccaatacttgaaatcaagttaagggaccaattgagcatttaagcca 43392297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 16833526 - 16833468
Alignment:
Q  172 agactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaatt 230  Q
    |||| ||||||||||||| ||| ||||| |||||||||||| |||||| |||| |||||    
T  16833526 agaccttttattacttataggaccaaaccaatacttgaaatcaagttaagggatcaatt 16833468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 37691718 - 37691764
Alignment:
Q  107 ttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    |||| ||||||||||||||||||||| |  |||||||||||||||||    
T  37691718 ttaacttgatttcaagtatcggtttgattccataagtaataaaaagt 37691764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 38085152 - 38085217
Alignment:
Q  85 gcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||| | ||||||||||||||||| |||| || |||| ||||| |  ||||||||||||||    
T  38085152 gcttaaatgtttaattggtcccttaatttaattttaaatatcagtttgatatcataagtaataaaa 38085217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 10394130 - 10394217
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||||| ||||||||    
T  10394130 ggcttaaatgctcaattggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaggttcgtttagatcccttaac 10394217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 39277949 - 39277862
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||  ||||||||    
T  39277949 ggcttaaatgctcaattggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagtccgtttaggtcccttaac 39277862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 47422228 - 47422164
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataa 148  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  47422228 ggcttaaatgctcaattggtcccttaacttgatttcaagtatcggtttggtcccataagtaataa 47422164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 28990298 - 28990365
Alignment:
Q  83 tggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  28990298 tggcttaaatgcttaattggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaa 28990365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 19920505 - 19920571
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  19920505 ggcttaaatgctcaattgatcccttaacttgatttcaagtatcggtttggtcccataagtaataaaa 19920571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 39277585 - 39277669
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||| | |||||  ||||||||    
T  39277585 ttaaatgctcaattggtcccttaacttaatttcaagtatcagtttggtcccataagtaataaaaagtccgtttaggtcccttaac 39277669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 47421891 - 47421957
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  47421891 ggcttacatgctcaattggtcccttaacttgatttcaaatatcggtttggtcccataagtaataaaa 47421957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 45823156 - 45823067
Alignment:
Q  82 atggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||| ||||||| |||||||| |||||||||| ||| ||||||||| ||||||||||||||||| | |||||  ||||||||    
T  45823156 atggcttaaatgttcaattgatcccttaacttgatttcaaatattggtttggtcccataagtaataaaaagtccgtttaggtcccttaac 45823067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 28990665 - 28990578
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||  |||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| || | |||||  ||||||||    
T  28990665 ggcttaaatattcaattggtcccttaacttgatttcaagtattggtttggtcccataagtaataaaaggtccgtttaggtcccttaac 28990578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 36077222 - 36077155
Alignment:
Q  83 tggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||||||||||| || |||||| ||||||||||||||||||||| || ||||||||||||||    
T  36077222 tggcttaaatgctcaattagttccttaacttgatttcaagtatcggtttgctcccataagtaataaaa 36077155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 27334349 - 27334411
Alignment:
Q  88 taaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  27334349 taaatgctcaattagtcccttaacttgatttcaagtatcgatttggtctcataagtaataaaa 27334411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 30049903 - 30049984
Alignment:
Q  72 aaataatataatggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    |||||| |||| || ||||||||||  |||||||||||| || ||||||||||||||||||||| |||| ||||||||||||    
T  30049903 aaataaaataaaggtttaaatgctcttttggtcccttaactttatttcaagtatcggtttggtctcatatgtaataaaaagt 30049984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 39277652 - 39277591
Alignment:
Q  173 gactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagc 234  Q
    ||||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||    
T  39277652 gactttttattacttatgggaccaaactgatacttgaaattaagttaagggaccaattgagc 39277591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 45822787 - 45822856
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    ||||||| ||||||||||||||||||| || ||||||||||||  ||||||| |||||||||||||||||    
T  45822787 ggcttaagtgctcaattggtcccttaacttaatttcaagtatcaatttggtcccataagtaataaaaagt 45822856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 36076885 - 36076972
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||| | ||||| |||||||| ||||||||||||||||| ||| || |||||||||||||| |||| |||||  ||||||||    
T  36076885 ggcttaaatgtttaattgttcccttaacttgatttcaagtatcggcttgatcccataagtaataaaaggttcgtttaggtcccttaac 36076972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 45822857 - 45822787
Alignment:
Q  173 gactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||||||||||||||| ||| |||| | |||||||||||||||||| ||||||||||||||  |||||||    
T  45822857 gactttttattacttatgggaccaaattgatacttgaaattaagttaagggaccaattgagcacttaagcc 45822787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 49186000 - 49186066
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||||||| || |||||| ||||||||||||||| ||||||||  |||||||||||||    
T  49186000 ggcttaaatgctcaattagttccttaacttgatttcaagtatcagtttggtcttataagtaataaaa 49186066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 15158341 - 15158409
Alignment:
Q  102 gtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaa 170  Q
    ||||||| | |||||||||||||||||||||||| |||||||||||||| |||| |||||  |||||||    
T  15158341 gtccctttacttgatttcaagtatcggtttggtcccataagtaataaaaggttcgtttaggtcccttaa 15158409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 30050281 - 30050213
Alignment:
Q  85 gcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    ||||||||| ||  ||||||| |||| |||||||||||||||||||||||| || ||||||||||||||    
T  30050281 gcttaaatgttcttttggtccattaacttgatttcaagtatcggtttggtcgcacaagtaataaaaagt 30050213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 10394496 - 10394410
Alignment:
Q  85 gcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    ||||||||||||||||||| |||||| |||||||||||||| | ||||||| ||||| || ||||| || | |||||  ||||||||    
T  10394496 gcttaaatgctcaattggttccttaacttgatttcaagtattgttttggtcccataaatattaaaaggtccgtttaggtcccttaac 10394410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 16959204 - 16959138
Alignment:
Q  85 gcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaa 151  Q
    ||||||||||||  ||| ||| || | |||||||||||||||||||||||| |||||||||||||||    
T  16959204 gcttaaatgctcttttgatcctttgacttgatttcaagtatcggtttggtcccataagtaataaaaa 16959138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 39277879 - 39277949
Alignment:
Q  173 gactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||||||||||||||| ||| |||||  ||||||||||| |||||| ||||||||||||||  |||||||    
T  39277879 gactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaattgagcatttaagcc 39277949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 7714193 - 7714241
Alignment:
Q  105 ccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||||||    
T  7714193 ccttaacttgattttaagtatcggtttggtcccataagtaataaaaagt 7714241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 16958861 - 16958929
Alignment:
Q  103 tcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||| |||||||||||| ||||||||||| ||||| |||||||| || |||||||  ||||||||    
T  16958861 tcccttaacttgatttcaagtgtcggtttggtcccataaataataaaaggtccatttaggtcccttaac 16958929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 28990599 - 28990654
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattga 232  Q
    ||||||||||||| ||| ||||| |||||||||||| |||||| ||||||||||||    
T  28990599 ttttattacttatgggaccaaaccaatacttgaaatcaagttaagggaccaattga 28990654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 10394196 - 10394130
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||||||||||| ||| |||||  ||||||||||| |||||| ||||||||||||||  |||||||    
T  10394196 ttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaattgagcatttaagcc 10394130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 47422154 - 47422228
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||||| | ||||||||||| ||| |||||  ||||||||||| |||||| ||||||||||||||  |||||||    
T  47422154 aacagacctcttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaattgagcatttaagcc 47422228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 45823084 - 45823157
Alignment:
Q  173 gactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagccata 246  Q
    ||||||||||||||||| ||| ||||| |||| ||||||| |||||| |||| ||||||| |  ||||||||||    
T  45823084 gactttttattacttatgggaccaaaccaatatttgaaatcaagttaagggatcaattgaacatttaagccata 45823157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 47421965 - 47421900
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagc 234  Q
    ||||||| ||||||||||||| ||| |||||  ||| ||||||| |||||| ||||||||||||||    
T  47421965 aacagacattttattacttatgggaccaaaccgatatttgaaatcaagttaagggaccaattgagc 47421900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 28990365 - 28990298
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcca 244  Q
    ||||||||||||| ||| |||||  ||||||||||| |||||| |||||||||| |||  ||||||||    
T  28990365 ttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaattaagcatttaagcca 28990298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 36077147 - 36077222
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcca 244  Q
    ||||||| ||||||||||||| ||| |||||  ||||||||||| |||||| || || ||||||||  ||||||||    
T  36077147 aacagaccttttattacttatgggagcaaaccgatacttgaaatcaagttaaggaactaattgagcatttaagcca 36077222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 19920571 - 19920505
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||||||||||| ||| |||||  ||||||||||| |||||| |||| |||||||||  |||||||    
T  19920571 ttttattacttatgggaccaaaccgatacttgaaatcaagttaagggatcaattgagcatttaagcc 19920505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 52285419 - 52285353
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||| ||  |||||||||||| ||||||| |||||||  |||||||  |||||||||||||    
T  52285419 ggcttaaatgttcttttggtcccttaacttgattttaagtatcaatttggtcctataagtaataaaa 52285353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 35750 - 35651
Alignment:
Q  251 aatcatataaaagatttagaagatatttcttctataagctcacacatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    ||||||| ||| |||||||| | || |||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  35750 aatcatacaaaggatttagatgctacttcttctataagttcaaacatgcatgaataatttttcaaaacatcgcagcagaataatatcataacatctcatc 35651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 28280 - 28336
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    ||||||| || |||||||| ||||||||||||| |||||||||||||| || |||||    
T  28280 acatgcaaaaataattttttaaaacatcgcagcggaataatatcataatatatcatc 28336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 24039249 - 24039327
Alignment:
Q  83 tggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttag 161  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  24039249 tggcttaaatgttcaattgatcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagttcgtttag 24039327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 36215648 - 36215736
Alignment:
Q  83 tggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| || | ||||||  |||||||    
T  36215648 tggcttaaatgctcaattggtcccttaacttaatttcaagtatcggtttggtcccataagtaataaaaggtccgtttagattccttaac 36215736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 1113212 - 1113279
Alignment:
Q  86 cttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  1113212 cttaaatgctcaattggtcccttaacttgatttcaagtatcgggttggtcccataagtaataaaaagt 1113279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 24039616 - 24039529
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||| |||||  ||||||||    
T  24039616 ggcttaaatgcttaattggtcccttaacttgatttcaagtattggtttggtctcataagtaataaaaggttcgtttaggtcccttaac 24039529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 55620193 - 55620262
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  55620193 ggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagt 55620262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 55627497 - 55627566
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  55627497 ggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagt 55627566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 17254813 - 17254726
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||||||| || | |||||  ||||||||    
T  17254813 ggcttaaatgctcaattggtcccttaacttgatttcaagtattggtttgatctcataagtaataaaatgtccgtttaggtcccttaac 17254726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 8607778 - 8607842
Alignment:
Q  86 cttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||    
T  8607778 cttaaatgctcaattggtctcttaacttgatttcaagtatcggtttgatcccataagtaataaaa 8607842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 1113545 - 1113478
Alignment:
Q  83 tggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||| || |||||    
T  1113545 tggcttaaatgctcaattggtcccttaacttgatttcaagtattgatttggtcccataaatattaaaa 1113478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 9246973 - 9247075
Alignment:
Q  254 catataaaagatttagaagatatttcttctataagctc--acacatgcataattaatttttcaaaacatcgcagcagaa----taatatcataacatctc 347  Q
    |||| ||| |||||||| | || |||||||||||| ||  | |||||||||||||||||||||||||||||||||||||    ||||||||| |||||||    
T  9246973 catacaaaggatttagatgctacttcttctataagttcctaaacatgcataattaatttttcaaaacatcgcagcagaatatttaatatcatcacatctc 9247072  T
Q  348 atc 350  Q
    |||    
T  9247073 atc 9247075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 48018610 - 48018676
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||||||||||| || |||||||||||    
T  48018610 ggcttaaatgctcaattggtctcttaacttgatttaaaatatcggtttggtcccaaaagtaataaaa 48018676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 36215715 - 36215648
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcca 244  Q
    ||||||||||||| ||| |||||  |||||||||||||||||| ||||||||||||||  ||||||||    
T  36215715 ttttattacttatgggaccaaaccgatacttgaaattaagttaagggaccaattgagcatttaagcca 36215648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 17254747 - 17254813
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    |||||||||||||  |||||||| |||||||||||| |||||| ||||||||||||||  |||||||    
T  17254747 ttttattacttatgagatcaaaccaatacttgaaatcaagttaagggaccaattgagcatttaagcc 17254813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 1113284 - 1113219
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagc 234  Q
    ||||||||||||||||||||| ||| ||| |  ||||||||||| |||||| ||||||||||||||    
T  1113284 aacagactttttattacttatgggaccaacccgatacttgaaatcaagttaagggaccaattgagc 1113219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 29430257 - 29430206
Alignment:
Q  99 ttggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||||| ||||||| |||||| ||||||||| ||||||||||||||    
T  29430257 ttggtcccttaacttgattttaagtattggtttggtcccataagtaataaaa 29430206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 55561022 - 55561089
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagtt 154  Q
    |||||||||| |||| |||||||| ||||||||||  ||| |||||||  ||||||||||||||||||    
T  55561022 ttaaatgctcgattgatcccttaacttgatttcaaacatcagtttggttccataagtaataaaaagtt 55561089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 55620267 - 55620208
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaa 228  Q
    ||||||||||||||||||||| ||| |||||  ||||||||||| |||||| ||||||||    
T  55620267 aacagactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaa 55620208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 55627571 - 55627512
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaa 228  Q
    ||||||||||||||||||||| ||| |||||  ||||||||||| |||||| ||||||||    
T  55627571 aacagactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaa 55627512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 8607842 - 8607785
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagc 234  Q
    ||||||||||||| |||||||||  ||||||||||| |||||| | ||||||||||||    
T  8607842 ttttattacttatgggatcaaaccgatacttgaaatcaagttaagagaccaattgagc 8607785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 29429942 - 29430024
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    ||||||||||  |||||||||||| |||||||||| ||||||||||||  | ||||||| ||||||| | |||||| ||| ||||    
T  29429942 ttaaatgctcttttggtcccttaacttgatttcaaatatcggtttggt--cctaagtaagaaaaagtccgtttagatcccctaac 29430024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 31933236 - 31933320
Alignment:
Q  251 aatcatataaaagatttagaagatatttcttctataagctcaca-catgcataattaatttttcaaaacatcgcagcagaataat 334  Q
    ||||||| ||| |||||||| | || ||||||||||||  || | ||||||||| |||||||||||||||||||| | |||||||    
T  31933236 aatcatacaaaggatttagatgttacttcttctataagtccaaaacatgcataaataatttttcaaaacatcgcaacggaataat 31933320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 1113470 - 1113545
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcca 244  Q
    ||||||| ||||| || |||| ||| ||||  |||||||||||| |||||| ||||||||||||||  ||||||||    
T  1113470 aacagaccttttaatatttatgggaccaaatcaatacttgaaatcaagttaagggaccaattgagcatttaagcca 1113545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 24039319 - 24039261
Alignment:
Q  174 actttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattga 232  Q
    |||||||||||||||| ||| |||||  ||||||||||| |||||| |||| |||||||    
T  24039319 actttttattacttatgggaccaaaccgatacttgaaatcaagttaagggatcaattga 24039261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 24039550 - 24039616
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    |||||||||||||  || ||||| |||||||||||| |||||| |||||||||| |||  |||||||    
T  24039550 ttttattacttatgagaccaaaccaatacttgaaatcaagttaagggaccaattaagcatttaagcc 24039616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 9219624 - 9219665
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaataata 335  Q
    |||||||||||||||||||||||||||| ||||  |||||||    
T  9219624 acatgcataattaatttttcaaaacatcacagcgaaataata 9219665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 12261192 - 12261104
Alignment:
Q  83 tggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || | |||||  ||||||||    
T  12261192 tggcttaaatgttcaattggtcccttaacttgatttcaagtatcggtttggtcacataagcaataaaaggtccgtttagctcccttaac 12261104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 12701927 - 12702014
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || | |||||  ||||||||    
T  12701927 ggcttaaatgctcaattggtcctttaacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaac 12702014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 21304328 - 21304415
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||| |||| |||||| | ||||||    
T  21304328 ggcttaaatgctcaattgatcccttaacttgatttcaaatatcggtttggtcccataagtaataaaatgttcgtttagatcgcttaac 21304415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 12702293 - 12702206
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||| || | |||||  ||||||||    
T  12702293 ggcttaaatgctcaattagtcccttaacttgatatcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaac 12702206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 34138017 - 34137918
Alignment:
Q  251 aatcatataaaagatttagaagatatttcttctataagctc--acacatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctca 348  Q
    ||||||| |||||||||||| | || |||||||||||| |   | |||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||    
T  34138017 aatcatacaaaagatttagatgttacttcttctataagttttaaaacatgcataaataaattttcaaaacatcgcagcaaaataatatcatcacatctca 34137918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 20718771 - 20718826
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    ||||||||||||||||||||||||| | | ||  |||||||||||||||||||||||    
T  20718771 acatgcataattaatttttcaaaac-ttgaagaggaataatatcataacatctcatc 20718826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 2217622 - 2217688
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||||||   || |||||||| |||||||||  ||||||||||||  ||||||||||||||    
T  2217622 ggcttaaatgctcttctgatcccttaacttgatttcagatatcggtttggttccataagtaataaaa 2217688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 2217973 - 2217908
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||| |||||||  ||||||| |||| |||||||||||||  ||||||||| ||||||||||||||    
T  2217973 ggctttaatgctcttttggtcc-ttaacttgatttcaagtaatggtttggtcccataagtaataaaa 2217908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 12701993 - 12701927
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||||||||||| ||| |||||  ||||||||||| ||||||  |||||||||||||  |||||||    
T  12701993 ttttattacttatgggaccaaaccgatacttgaaatcaagttaaaggaccaattgagcatttaagcc 12701927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 340
Target Start/End: Original strand, 18928161 - 18928250
Alignment:
Q  254 catataaaagatttagaagatatttcttctataagctcacac-atgcataattaatttttc--aaaacatcgcagcagaataatatcata 340  Q
    |||| ||| |||||||| | || ||||||||||||  || || ||| ||||||||||||||  ||||||||||||| |||||||||||||    
T  18928161 catacaaaggatttagatgctacttcttctataagtccaaaccatgaataattaatttttctcaaaacatcgcagcggaataatatcata 18928250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 3568627 - 3568554
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcattta 160  Q
    ||||||| | ||||||||| | |  ||||||||||||||||||||| || ||||| |||||||| || ||||||    
T  3568627 ttaaatgttaaattggtccttcatcttgatttcaagtatcggtttgatcccataaataataaaaggtccattta 3568554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 21651764 - 21651855
Alignment:
Q  244 ataatataatcatataaaagatttagaagatatttcttctataagctcacacatgcataattaatttttc---aaaacatcgcagcagaata 332  Q
    |||||| ||| ||| ||| ||| |||| | || |||||||||||| | | ||||||||||||||||||||   ||||||||||||| |||||    
T  21651764 ataatacaattatacaaaggatctagatgctacttcttctataagtttaaacatgcataattaatttttctcaaaaacatcgcagcggaata 21651855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 11047345 - 11047258
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || | |||||  ||||||||    
T  11047345 ggcttaaatgttcaattggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaac 11047258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 49220452 - 49220380
Alignment:
Q  81 aatggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||    
T  49220452 aatggattaaatgctcaattggtcccttaacttaatttcaagtatcggtttggtcccataaataataaaaagt 49220380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 52856976 - 52857063
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||||||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| || | ||||||  |||||||    
T  52856976 ggcttaaacgctcaattggtcccttaacttaatttcaagtatcggtttggtcccataagtaataaaaggtccgtttagataccttaac 52857063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 28253807 - 28253741
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| ||||||||    
T  28253807 ggcttaaatgctcaattggtcccttaacttgatttcaagtatcggattggtcccataaataataaaa 28253741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 49220114 - 49220183
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagt 153  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||||| ||| ||||| |||||||||||    
T  49220114 ggcttaaatgcttaattggtcccttaacttgattttaagtatcggtttagtcccataaataataaaaagt 49220183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 26988800 - 26988892
Alignment:
Q  79 ataatggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcatttagaccccttaac 171  Q
    |||| |||||||||||| |||||||||||||| || |||||||||||| |||| ||| |||||||||||||| || | |||||  ||||||||    
T  26988800 ataaaggcttaaatgcttaattggtcccttaactttatttcaagtatcagttttgtcccataagtaataaaatgtccttttaggtcccttaac 26988892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 11046927 - 11046978
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtc 135  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  11046927 ggcttaaatgctcaattggtcccttaacttgatttcatgtatcggtttggtc 11046978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 350
Target Start/End: Complemental strand, 40355638 - 40355532
Alignment:
Q  244 ataatataatcatataaaagatttagaagatatttcttctataagctcacacatgcataattaatttttcaaaacatcgcagcagaataatatcataaca 343  Q
    |||||| ||||||||||| |||||||| | || ||||||||||||  || ||||||| || ||||||||||||||||   |||  ||||||||||||| |    
T  40355638 ataatacaatcatataaaggatttagatgctacttcttctataagtccaaacatgcaaaaataatttttcaaaacattagagcgaaataatatcataata 40355539  T
Q  344 tctcatc 350  Q
    |||||||    
T  40355538 tctcatc 40355532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 15855256 - 15855353
Alignment:
Q  251 aatcatataaaagatttagaagatatttcttctataagctcacacatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctca 348  Q
    ||||||| ||| |||||||| | || |||||| |||||  || |||||||||| |||||||| ||||||||||||| ||||||||||| || ||||||    
T  15855256 aatcatacaaaggatttagatgttacttcttcaataagtccaaacatgcataaataattttttaaaacatcgcagcggaataatatcacaatatctca 15855353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 28253446 - 28253519
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaaagttcattta 160  Q
    ||||||| ||||||||||||||||  |||||||||||||| | |||||| || |||||||||||||||| ||||    
T  28253446 ttaaatgttcaattggtcccttaacatgatttcaagtatcagattggtcccaaaagtaataaaaagttcgttta 28253519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 49220375 - 49220440
Alignment:
Q  169 aacagactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagc 234  Q
    |||||||||||||||| |||| ||| |||||  |||||||||||||||||| ||||||||||||||    
T  49220375 aacagactttttattatttatgggaccaaaccgatacttgaaattaagttaagggaccaattgagc 49220440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 31070949 - 31071015
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||| ||  |||||||||||| ||||||| ||||||| |||||||| ||||||||||||||    
T  31070949 ggcttaaatgttcttttggtcccttaacttgattttaagtatcagtttggtcccataagtaataaaa 31071015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 52857042 - 52856976
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||||||||||| ||| |||||  |||||||||||||||||| ||||||||||||||  |||||||    
T  52857042 ttttattacttatgggaccaaaccgatacttgaaattaagttaagggaccaattgagcgtttaagcc 52856976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 31071281 - 31071215
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||||||  ||  |||||||| ||||||||||||||||||||| || ||||| ||||||||    
T  31071281 ggcttaaatgctcttttcttcccttaacttgatttcaagtatcggtttgatcccataaataataaaa 31071215  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 19707349 - 19707405
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcaga--ataatatcataacatctca 348  Q
    |||||||||| |||||||||||||||||||||| ||  |||||||||| ||||||||    
T  19707349 acatgcataaataatttttcaaaacatcgcagcggaatataatatcatcacatctca 19707405  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 27049285 - 27049357
Alignment:
Q  263 gatttagaagatatttcttctataagctcacacatgcataattaatttt-tcaaaacatcgcagcagaataat 334  Q
    |||||||| | |||||||||||||||  || |||||||||| ||||||| ||||||||| ||||| |||||||    
T  27049285 gatttagatgctatttcttctataagtccaaacatgcataaataattttctcaaaacattgcagcggaataat 27049357  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 11047279 - 11047334
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattga 232  Q
    ||||||||||||| ||| |||||  ||||||||||| |||||| ||||||||||||    
T  11047279 ttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaattga 11047334  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 26988871 - 26988805
Alignment:
Q  177 ttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||||||||||| |||  ||||| ||||||||||| |||||| |||||||||| |||  |||||||    
T  26988871 ttttattacttatgggacaaaactgatacttgaaataaagttaagggaccaattaagcatttaagcc 26988805  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 38278832 - 38278755
Alignment:
Q  260 aaagatttagaagatatttcttctataagctcac--acatgcataattaatttttcaaaacatcgcagcagaataata 335  Q
    ||||||||||| | || |||||||||||| ||    ||||||||||||| |||||||||||||| |||| ||||||||    
T  38278832 aaagatttagatgttacttcttctataagttctagaacatgcataattattttttcaaaacatcacagcggaataata 38278755  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 11046990 - 11047034
Alignment:
Q  106 cttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||| ||||||||| |||||||||||||| |||||| |||||||    
T  11046990 cttaacttgatttcatgtatcggtttggtcccataagaaataaaa 11047034  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 28253735 - 28253807
Alignment:
Q  171 cagactttttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgagccgttaagcc 243  Q
    ||||| |||||||| |||| ||| ||| |  ||||||||||| |||||| ||||||||||||||  |||||||    
T  28253735 cagaccttttattatttatgggaccaatccgatacttgaaatcaagttaagggaccaattgagcatttaagcc 28253807  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 263 - 350
Target Start/End: Complemental strand, 16166135 - 16166046
Alignment:
Q  263 gatttagaagatatttcttctataag--ctcacacatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    |||||||| ||||||||||| |||||  |  | |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  16166135 gatttagatgatatttcttcaataagtccaaaaacatgcataaataatttttcaaaacagcgcagcagaataatatcataacatcgcatc 16166046  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 23292530 - 23292628
Alignment:
Q  251 aatcatataaaagatttagaagatatttcttctataagctcacacatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    |||||||||| | ||||||| | || ||||||||||||  || ||||||||||||||||||||||||||| ||||  || | ||||||||||||||||||    
T  23292530 aatcatataaga-atttagatgttacttcttctataagtccaaacatgcataattaatttttcaaaacattgcagtggatttatatcataacatctcatc 23292628  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 1211748 - 1211696
Alignment:
Q  98 attggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  1211748 attggtcccttaacttgatttcaagtatctgtttggtctcataagtaataaaa 1211696  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 14352265 - 14352323
Alignment:
Q  277 ttcttctataagctcaca-catgcataattaatttttcaaaacatcgcagcagaataat 334  Q
    |||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||    
T  14352265 ttcttctataagttcaaaacatgcataattaatttttcaaaacatcgcaacagaataat 14352323  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 1211397 - 1211460
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||||| |||||||| ||||||| ||||||| ||||| || |||| |||||||||    
T  1211397 ttaaatgctcaattgatcccttaacttgatttgaagtatcagtttgatcccatatgtaataaaa 1211460  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 12478836 - 12478791
Alignment:
Q  305 taatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||    
T  12478836 taatttttcaaaacatcgcagcggaataataacataacatatcatc 12478791  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 12484386 - 12484424
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaata 332  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  12484386 acatgcataagtaatttttcaaaacatcgcagcggaata 12484424  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 17907826 - 17907880
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    |||| |||||||||||||||||||| | | ||||||||||||| |||||||||||||    
T  17907826 acatacataattaatttttcaaaac-tggtagcagaataatat-ataacatctcatc 17907880  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 8417561 - 8417625
Alignment:
Q  86 cttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||| || || |||||||||||    
T  8417561 cttaaatgctcttttggtcccttaacttgatttcaagtatcggtttgatctcacaagtaataaaa 8417625  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 18968866 - 18968803
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||| || ||||| ||||||||    
T  18968866 ttaaatgctcaattgattccttaacttgatttcaagtatcggtttgatcccataaataataaaa 18968803  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 36207544 - 36207476
Alignment:
Q  84 ggcttaaatgctcaattggt-cccttaatttgatttcaagtatcggtttggtcacataagtaataaaaa 151  Q
    |||||||||| ||||||| | ||| ||| ||||||||||||| ||||||| ||||||||||||||||||    
T  36207544 ggcttaaatgttcaattgatacccataacttgatttcaagtaccggtttgatcacataagtaataaaaa 36207476  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 9989959 - 9990021
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaaa 150  Q
    ||||||| |||||||||||||||| ||||||| ||| |||||||||||| ||||| ||||||||    
T  9989959 ttaaatgttcaattggtcccttaacttgattttaagaatcggtttggtc-cataattaataaaa 9990021  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 20846904 - 20846869
Alignment:
Q  314 aaaacatcgcagcagaataatatcataacatctcat 349  Q
    ||||||||||||| ||||||||||||||||||||||    
T  20846904 aaaacatcgcagcggaataatatcataacatctcat 20846869  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 18968509 - 18968559
Alignment:
Q  84 ggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggt 134  Q
    |||||||||||| ||||  |||||||| |||||||||||||| ||||||||    
T  18968509 ggcttaaatgctaaattaatcccttaacttgatttcaagtattggtttggt 18968559  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 37277490 - 37277541
Alignment:
Q  298 gcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    |||||| |||||||||||| |||| || |||||||||||||||| ||||||||    
T  37277490 gcataaataatttttcaaa-catcacatcagaataatatcataatatctcatc 37277541  T

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Target: scaffold0115 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 41753 - 41698
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    ||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||    
T  41753 acatgcataattttttttccaaaac-tcgcagcagaataatatcataacatctcatc 41698  T

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Target: scaffold0130 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 25311 - 25361
Alignment:
Q  82 atggcttaaatgctcaattggtcccttaatttgatttcaagtatcggtttg 132  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||    
T  25311 atggcttaaatgttcaatcggtcccttaacttgatttcaagtttcggtttg 25361  T

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Target: scaffold0130; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 25617 - 25555
Alignment:
Q  87 ttaaatgctcaattggtcccttaatttgatttcaagtatcggtttggtcacataagtaataaa 149  Q
    |||||| |||||||||| || ||| ||||||||||||||| ||||| || |||||||||||||    
T  25617 ttaaatactcaattggttccataaattgatttcaagtatcagtttgatctcataagtaataaa 25555  T

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Target: scaffold0130; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 25555 - 25610
Alignment:
Q  178 tttattacttattggatcaaactaatacttgaaattaagttatgggaccaattgag 233  Q
    ||||||||||||  ||||||||| ||||||||||| || |||||| ||||||||||    
T  25555 tttattacttatgagatcaaactgatacttgaaatcaatttatggaaccaattgag 25610  T

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Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 22608 - 22663
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaataatatcataacatctcatc 350  Q
    ||||||||||||||||||||||||| | | ||  |||||||||||||||||||||||    
T  22608 acatgcataattaatttttcaaaac-ttgaagaggaataatatcataacatctcatc 22663  T

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Target: scaffold0135 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 30275 - 30316
Alignment:
Q  294 acatgcataattaatttttcaaaacatcgcagcagaataata 335  Q
    |||||||||||||||||||||||||||| ||||  |||||||    
T  30275 acatgcataattaatttttcaaaacatcacagcgaaataata 30316  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 64120 - 64161
Alignment:
Q  298 gcataattaatttttcaaaacatcgcagcagaataatatcat 339  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||    
T  64120 gcatacttaatttttcaaaacatcgcagcggaacaatatcat 64161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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