View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_27 (Length: 338)
Name: NF17326_low_27
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_27 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 13785340 - 13785586
Alignment:
| Q |
18 |
agctcattctggtgtttcgaagagaaatccataagaacaaatgcaatttctgatgaatgttatgttgggtttaatatattgatgaggaatcatcgaccac |
117 |
Q |
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| T |
13785340 |
agctcattctggtgtttcgaagagaaatccataagaacaaatgcaatttctgatgaatgttatgttgggtttaatatattgatgaggaatcatcgacc-- |
13785437 |
T |
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| Q |
118 |
attgtttttctatgttgtgcaacatgactaggaaatttgaacttcaaagccaaaggggctatcatgaataatacttctgagtacagcggtggaagcctca |
217 |
Q |
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| T |
13785438 |
---gtttttctatgttgtgcaacatgactaggaaatttgaacttcaaagccaaaggggctatcatgaataatacttctgagt-----ggtggaagcctca |
13785529 |
T |
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| Q |
218 |
cacagagaggcaccaaagcctaaatttattgagcgatcacagacacggtttttcttc |
274 |
Q |
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| T |
13785530 |
cacagagaggcaccaaagcctaaatttattgagcgatcacagacacggtttttcttc |
13785586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 34983 - 35143
Alignment:
| Q |
21 |
tcattctggtgtttcgaagagaaatccataagaacaaatgcaatttctgatgaatgttatgttgggtttaatatattgatgaggaatcatcgaccacatt |
120 |
Q |
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| T |
34983 |
tcattctggtgtttcgaagagaaatccataaaatcaattgcaatttctgaggaatgttatgttgggtt-aacatattgatgaggaatcatcgaccacagt |
35081 |
T |
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| Q |
121 |
gtttttctatgttgtgcaacatgactaggaaatttgaacttcaaagccaaaggggctatcat |
182 |
Q |
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| T |
35082 |
gttttcctatgtcgtgcaacatgactagtaaatttgaacttcaaagccaaaggggctatcat |
35143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 321
Target Start/End: Original strand, 29825 - 30014
Alignment:
| Q |
132 |
ttgtgcaacatgactaggaaatttgaacttcaaagccaaaggggctatcatgaataatacttctgagtacagcggtggaagcctcacacagagaggcacc |
231 |
Q |
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| T |
29825 |
ttgtgcaacatggctaggaaatttgaacttcaaagccaaaagggctatcatgaataa-------gagtacaacggtggaagcctcacaaagggcggcacc |
29917 |
T |
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| Q |
232 |
aaagcctaaatttattgagcgatcacagacacggtttttcttctgggtatatattttgcaa-------caagggactgcaacaacagagaatagcac |
321 |
Q |
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| T |
29918 |
aaggcctaaatttattgagctatcacagaaatggtttttcttctgggtataaattttccaataataatcaagggactgcaacaacagtgaatagcac |
30014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 14939339 - 14939446
Alignment:
| Q |
128 |
tatgttgtgcaacatgactaggaaatttgaacttcaaagccaaaggggctatcatgaataatacttctgagtacagcggtggaagcct--cacacagaga |
225 |
Q |
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| T |
14939339 |
tatgttgcgcaatatgactgagaaatttgaacttcatagctaaaggggttgtggtgaatcatacttctgagtactacagtggaagccttagacacaggga |
14939438 |
T |
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| Q |
226 |
ggcaccaa |
233 |
Q |
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| T |
14939439 |
ggcaccaa |
14939446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 33638736 - 33638785
Alignment:
| Q |
19 |
gctcattctggtgtttcgaagagaaatccataagaacaaatgcaatttct |
68 |
Q |
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| T |
33638736 |
gctcattctagtgtttcggagagaaaggcataagatcaaatgcaatttct |
33638785 |
T |
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