View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_low_3 (Length: 654)

Name: NF17326_low_3
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_low_3
NF17326_low_3
[»] chr2 (3 HSPs)
chr2 (18-640)||(41931866-41932477)
chr2 (234-302)||(40186436-40186504)
chr2 (305-374)||(40186536-40186605)
[»] chr3 (10 HSPs)
chr3 (165-394)||(47865731-47865960)
chr3 (234-389)||(26719253-26719405)
chr3 (330-396)||(28963953-28964019)
chr3 (326-392)||(46567056-46567122)
chr3 (250-392)||(35756427-35756569)
chr3 (234-395)||(31218396-31218558)
chr3 (22-65)||(32210448-32210491)
chr3 (311-389)||(26740772-26740850)
chr3 (191-392)||(31805405-31805606)
chr3 (232-280)||(8005140-8005188)
[»] chr1 (4 HSPs)
chr1 (234-388)||(32979609-32979764)
chr1 (271-392)||(24814662-24814783)
chr1 (311-389)||(26266034-26266112)
chr1 (340-395)||(43048876-43048931)
[»] chr8 (3 HSPs)
chr8 (234-392)||(29526269-29526427)
chr8 (333-395)||(44340530-44340591)
chr8 (329-390)||(24736214-24736274)
[»] chr7 (1 HSPs)
chr7 (242-375)||(21833990-21834123)
[»] scaffold0045 (2 HSPs)
scaffold0045 (234-390)||(65046-65202)
scaffold0045 (234-390)||(72378-72534)
[»] chr4 (9 HSPs)
chr4 (219-408)||(29152811-29152999)
chr4 (232-392)||(13492335-13492494)
chr4 (234-377)||(4427282-4427426)
chr4 (235-381)||(17261103-17261240)
chr4 (290-389)||(18632264-18632363)
chr4 (288-390)||(39228841-39228943)
chr4 (357-395)||(53967209-53967247)
chr4 (357-413)||(52975220-52975275)
chr4 (299-412)||(18822558-18822671)


Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 640
Target Start/End: Original strand, 41931866 - 41932477
Alignment:
Q  18 cagcagagaccttcgtagtagtagttcttgggttagtatgaatggtcaaattgaccacatgaacttgtgttcccgcttcgtagtatgtaatgtagatata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41931866 cagcagagaccttcgtagtagtagttcttgggttagtatgaatggtcaaattgaccacatgaacttgtgttcccgcttcgtagtatgtaatgtagatata 41931965  T
Q  118 tttgaatatgtgattgtttaattcagtttccacctttttctccacatcatcatgttgcgttctcaaattcttctgagggtacatgagagggatgacaggt 217  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||| ||    
T  41931966 tttgaatatgtgattgtttaattcagttcccaccttttcctccacatcatcatgt---gttttcaaattcttctgagggtacatgagagggatgacatgt 41932062  T
Q  218 cttctccttcgtttcacctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatg 317  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||         ||||||||  |||||||||||||    
T  41932063 cttctccttcgttccacctccatcttcttgtactacatatttaattttagttgccaacattttgtaca---------tatgttaatataaatatattatg 41932153  T
Q  318 aaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattttgctgaactaataaattaaac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41932154 aaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattttgctgaactaataaattaaac 41932253  T
Q  418 gccataaaataattcattcagagaacgtgtgagaatcgtgaaagcgtgagaactataaacatataaaaagaaattctcaatattatttgcaagagataa- 516  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  41932254 gccat-aaataatctattcagagaacgtgtgagaatcgtgaaagcgtgagaactataaacatataaaaagaaattctgaatattatttgcaagagataaa 41932352  T
Q  517 -atagagaacaaagtggtccatcaccaaaccatacatactattactggtgggccctaaattgaaagtagaaaaacaaaaattctttaaagggacatacaa 615  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41932353 tatagagaacaaagtggtccatcaccaaactatacatactattactggtgggccctaaattgaaagtagaaaaacaaaaattctttaaagggacatacaa 41932452  T
Q  616 gggatatcacaccaccgagtattat 640  Q
    |||||||||||||||||||||||||    
T  41932453 gggatatcacaccaccgagtattat 41932477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 40186436 - 40186504
Alignment:
Q  234 cctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaa 302  Q
    ||||||||||||||| |||||  |||||||||||||||||| ||||| ||| | | |||||||||||||    
T  40186436 cctccatcttcttgtgctacaagtttaattttagttgccaatattttgtactacacagtgttatgttaa 40186504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 374
Target Start/End: Original strand, 40186536 - 40186605
Alignment:
Q  305 taaatatattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaa 374  Q
    ||||| |||| |||||||  ||||||||||||||||||  | | ||||||| ||||||||||||||||||    
T  40186536 taaatgtattttgaaatcattttcaattaataaaatgttattaattattaaattttgttgtcaattttaa 40186605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 165 - 394
Target Start/End: Original strand, 47865731 - 47865960
Alignment:
Q  165 catcatgttgcgttctcaaattcttctgagggtacatgagagggatgacaggtcttctccttcgtttcacctccatcttcttgtactacatatttaattt 264  Q
    |||||| ||| ||||||||||| || ||| || |||||| ||||||||||   ||||||  || || ||||| |||||||||||||| |||||||| |||    
T  47865731 catcatcttgtgttctcaaattattttgaaggcacatgaaagggatgacaaaccttctctctccttccaccttcatcttcttgtacttcatatttagttt 47865830  T
Q  265 tagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttg 364  Q
    ||||||| ||| |||| ||    |||||||  ||| ||||||||||||||| ||||||   |||||||||||||||||| ||| ||  ||| ||||||||    
T  47865831 tagttgctaaccttttgtaatgcatagtgtcgtgtcaacgtaaatatattacgaaatcatgttcaattaataaaatgtgatgaattgataaattttgttg 47865930  T
Q  365 tcaattttaaattatgtcattttaataaat 394  Q
    |||||| ||||||| |||||||||||||||    
T  47865931 tcaattataaattacgtcattttaataaat 47865960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 389
Target Start/End: Complemental strand, 26719405 - 26719253
Alignment:
Q  234 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 332  Q
    |||||||||||||||| |||| |||||  ||| | || ||| |||||| |||||  |||||||||||||| ||     |||||| |||||  ||| ||||    
T  26719405 cctccatcttcttgtattacaaatttagcttttgatgtcaaacattttgtacaaattagtgttatgttaatgtg----tattataaaatccttttgaatt 26719310  T
Q  333 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaa 389  Q
    ||||||||||||||| ||||||| |||  |||||| ||||| |||||||||||||||    
T  26719309 aataaaatgtgttgaattattaaatttcattgtcagttttatattatgtcattttaa 26719253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 28964019 - 28963953
Alignment:
Q  330 attaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattt 396  Q
    ||||||||| |||||||| ||| ||| |||||||||| |||||||||||| ||||||||||||||||    
T  28964019 attaataaattgtgttgaattaataaattttgttgtccattttaaattatatcattttaataaattt 28963953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 46567056 - 46567122
Alignment:
Q  326 ttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataa 392  Q
    |||||||||||||||||| ||| ||||||| |||| ||||||||||||||| |||| ||||||||||    
T  46567056 ttcaattaataaaatgtgatgatttattaaattttattgtcaattttaaataatgtgattttaataa 46567122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 250 - 392
Target Start/End: Complemental strand, 35756569 - 35756427
Alignment:
Q  250 ctacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctat-ttcaattaataaaatgtgttgag 348  Q
    ||||||||||  ||||||||||||||||||||||  | | |||||| || ||| ||| || | ||||||||| ||| |||| ||| ||||||||| | |     
T  35756569 ctacatatttcgttttagttgccaacattttatagtacacagtgttgtgataatgtatatgtgttatgaaat-tatgttcatttactaaaatgtgataaa 35756471  T
Q  349 ttattaatttttgttgtcaattttaaattatgtcattttaataa 392  Q
    ||||||| |||| |||||||||||||| ||| ||||| ||||||    
T  35756470 ttattaagttttattgtcaattttaaaatatatcattataataa 35756427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 395
Target Start/End: Original strand, 31218396 - 31218558
Alignment:
Q  234 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 332  Q
    |||||||||||||| ||||||||||||| |||| ||||||| |||||| ||| | ||||  ||| | ||  |||||| | ||||||||||   ||  |||    
T  31218396 cctccatcttcttggactacatatttaactttaattgccaaacattttctactacatagcattacggtattgtaaatgtgttatgaaatcatgtttgatt 31218495  T
Q  333 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaatt 395  Q
    |||||| |  | | | ||||||| |||| |||||||||||||||| |||| ||||||||||||    
T  31218496 aataaattaggctcaattattaaatttttttgtcaattttaaattttgtccttttaataaatt 31218558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 32210448 - 32210491
Alignment:
Q  22 agagaccttcgtagtagtagttcttgggttagtatgaatggtca 65  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  32210448 agagaccttcgtagtagtagttctagggttagtaagaatggtca 32210491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 26740850 - 26740772
Alignment:
Q  311 tattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaa 389  Q
    |||||| |||||  ||||||||||||||||||||||| ||||||| |||  ||||| ||||||  |||||||| |||||    
T  26740850 tattataaaatccttttcaattaataaaatgtgttgaattattaaatttcattgtcgattttatgttatgtcaatttaa 26740772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 392
Target Start/End: Complemental strand, 31805606 - 31805405
Alignment:
Q  191 tgagggtacatgagagggatgacaggtcttctccttcgtttcacctccatcttcttgtactacatatttaattttagttg-ccaacattttatacaatat 289  Q
    ||||||| ||||||||||||| || | ||||||| || || ||||||||| |||||||||| || |||||  |||||  | | || ||||| ||| |  |    
T  31805606 tgagggtccatgagagggatggcaagccttctccctcattccacctccatattcttgtacttcaaatttagctttaggcgtcaaatattttgtactaatt 31805507  T
Q  290 agtgttatgttaacgtaaatatattatgaaatctatttc-aattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcatttta 388  Q
    || |||||||||| ||| || |||||||||||| || || |  ||||| | |||| ||| ||||||| |||| || |||||||| ||||||||||||||     
T  31805506 agcgttatgttaatgtatatgtattatgaaatc-atgtctagataatagattgtgatgaattattaaattttatt-tcaatttttaattatgtcattttg 31805409  T
Q  389 ataa 392  Q
    ||||    
T  31805408 ataa 31805405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 8005188 - 8005140
Alignment:
Q  232 cacctccatcttcttgtactacatatttaattttagttgccaacatttt 280  Q
    ||||||||||||||||| |||||||||   ||||||||||||| |||||    
T  8005188 cacctccatcttcttgtgctacatattcggttttagttgccaatatttt 8005140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 234 - 388
Target Start/End: Complemental strand, 32979764 - 32979609
Alignment:
Q  234 cctccatcttcttgtactacatatttaattttagttgcca-acattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 332  Q
    ||||||||||||||| ||||| |||||||| ||||||||| ||||||| ||| | ||||||||||||||| | |||| ||||||||||||   ||||| |    
T  32979764 cctccatcttcttgtgctacagatttaattctagttgccacacattttgtactacatagtgttatgttaatgcaaatgtattatgaaatcatgttcaaat 32979665  T
Q  333 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcatttta 388  Q
    ||||||||||| ||| ||||||| || |||||| ||||||||||||||||||||||    
T  32979664 aataaaatgtgatgaattattaaattatgttgtaaattttaaattatgtcatttta 32979609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 271 - 392
Target Start/End: Original strand, 24814662 - 24814783
Alignment:
Q  271 ccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaatt 370  Q
    |||| ||||||||| |  |||||||||||||| ||||||  |||||| ||||   |||||| ||||||||||| | | ||||||| ||||||||||| ||    
T  24814662 ccaatattttatactacttagtgttatgttaatgtaaatgcattatggaatcatgttcaatcaataaaatgtgataaattattaaattttgttgtcagtt 24814761  T
Q  371 ttaaattatgtcattttaataa 392  Q
    ||||||||| || |||||||||    
T  24814762 ttaaattatatctttttaataa 24814783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 26266034 - 26266112
Alignment:
Q  311 tattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaa 389  Q
    ||||| |||||||  ||||| ||||||| |||||||| ||| ||| ||||| ||||||||||||||||| |||||||||    
T  26266034 tattacgaaatcttgttcaactaataaattgtgttgaattaataaattttgctgtcaattttaaattatatcattttaa 26266112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 43048876 - 43048931
Alignment:
Q  340 tgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaatt 395  Q
    |||||||| |||  || ||||||||||||||| |||| ||||||||||||||||||    
T  43048876 tgtgttgaattaacaaattttgttgtcaatttcaaatcatgtcattttaataaatt 43048931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 234 - 392
Target Start/End: Complemental strand, 29526427 - 29526269
Alignment:
Q  234 cctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatta 333  Q
    |||||||||  |||| ||||| |||||||||||||||  |||||||||||| | ||||||||||| ||| ||||||||||||||| ||| ||||||||||    
T  29526427 cctccatctgtttgtgctacaaatttaattttagttgtgaacattttatactacatagtgttatgctaatgtaaatatattatgacatc-atttcaatta 29526329  T
Q  334 ataaaatgtgttgagttattaatttttgttgtcaattttaaatt--atgtcattttaataa 392  Q
    |||||||||| ||| |||| || |||||||||| ||||||||||  || ||||||||||||    
T  29526328 ataaaatgtgatgaattataaaattttgttgtc-attttaaattagatatcattttaataa 29526269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 44340530 - 44340591
Alignment:
Q  333 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaatt 395  Q
    ||||||| ||| ||| ||||||| |||||||||||| |||| ||||||||||||| |||||||    
T  44340530 aataaaacgtgatgaattattaaattttgttgtcaa-tttatattatgtcattttgataaatt 44340591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 24736214 - 24736274
Alignment:
Q  329 aattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaat 390  Q
    ||||||||||||||||||| ||||||| ||| |||||| | ||||| |||||||||| ||||    
T  24736214 aattaataaaatgtgttgaattattaaatttggttgtc-actttaagttatgtcattataat 24736274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 242 - 375
Target Start/End: Complemental strand, 21834123 - 21833990
Alignment:
Q  242 ttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatg-aaatctatttcaattaataaaat 340  Q
    ||||| ||||||||||||| ||||||||||||| ||||| ||| | |||||||||||||||| ||||| ||||||| |||| || |||||||||||||||    
T  21834123 ttcttttactacatatttagttttagttgccaatattttttactagatagtgttatgttaacataaatgtattatgaaaatata-ttcaattaataaaat 21834025  T
Q  341 gtgttgagttattaatttttgttgtcaattttaaa 375  Q
    ||| ||| ||||||| |||| ||||||||||||||    
T  21834024 gtgatgaattattaaattttcttgtcaattttaaa 21833990  T

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Target: scaffold0045 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 234 - 390
Target Start/End: Original strand, 65046 - 65202
Alignment:
Q  234 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 332  Q
    |||||||| |||| |||||||||||||| |||||||| ||| |||||| ||| | ||   |||||||||  |||||| ||||||| | |||  |||||||    
T  65046 cctccatcatcttatactacatatttaactttagttgacaaacattttgtactaaatcccgttatgttattgtaaatgtattatgta-tcttgttcaatt 65144  T
Q  333 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaat 390  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  65145 aataaattgtgttgaattattaaattttgttgtcaattttaaattatgtcattttaat 65202  T

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Target: scaffold0045; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 234 - 390
Target Start/End: Original strand, 72378 - 72534
Alignment:
Q  234 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaatt 332  Q
    |||||||| |||| |||||||||||||| |||||||| ||| |||||| ||| | ||   |||||||||  |||||| ||||||| | |||  |||||||    
T  72378 cctccatcatcttatactacatatttaactttagttgacaaacattttgtactaaatcccgttatgttattgtaaatgtattatgta-tcttgttcaatt 72476  T
Q  333 aataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaat 390  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  72477 aataaattgtgttgaattattaaattttgttgtcaattttaaattatgtcattttaat 72534  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 219 - 408
Target Start/End: Original strand, 29152811 - 29152999
Alignment:
Q  219 ttctccttcgtttcacctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatga 318  Q
    ||||||||| || |||||||||||| || | ||||| ||||| | | | |||||| ||||||| || | |||||||| || | | |||||| |||||  |    
T  29152811 ttctccttccttccacctccatcttttt-tgctacaaatttagtgtcaattgccatcattttacactacatagtgttttgctgatgtaaatgtattagaa 29152909  T
Q  319 aatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattttgctgaactaat 408  Q
    || |   ||||||||||  |||||| ||| ||||||| |||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  29152910 aaacatgttcaattaatttaatgtgatgaattattaaattttgtttacaattttaaattatgtcattttaataaattttgttgaactaat 29152999  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 232 - 392
Target Start/End: Original strand, 13492335 - 13492494
Alignment:
Q  232 cacctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctat-ttcaa 330  Q
    ||||||||||||| ||| ||| |  |||| ||||||||||||| | ||||||| |  | |||||||| ||| ||||||  ||||| |||| ||| |||||    
T  13492335 cacctccatcttcctgtgctagaggtttagttttagttgccaataatttatactacttggtgttatgctaatgtaaatgcattataaaat-tatgttcaa 13492433  T
Q  331 ttaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataa 392  Q
    | ||||||||||| | | ||||||| ||| ||||||||||||||||||||||||||||||||    
T  13492434 tcaataaaatgtgataaattattaaattt-gttgtcaattttaaattatgtcattttaataa 13492494  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 234 - 377
Target Start/End: Original strand, 4427282 - 4427426
Alignment:
Q  234 cctccatcttcttgtactacatatttaattttagttgccaa-cattttatacaatatagtgttatgttaacgtaaatatattatgaaatctat-ttcaat 331  Q
    |||||| |||||||| ||||| ||||| ||||||| | ||| |||||| ||| || || | ||||||||| ||| ||||||| |||||| ||| |||  |    
T  4427282 cctccaccttcttgtgctacaaatttagttttagtcgtcaaacattttgtactatctaattttatgttaatgtagatatattttgaaat-tatgttcgct 4427380  T
Q  332 taataaaatgtgttgagttattaatttttgttgtcaattttaaatt 377  Q
    ||||||||| || |||  |||||| |||||||||||||||||||||    
T  4427381 taataaaatctgatgaactattaaattttgttgtcaattttaaatt 4427426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 381
Target Start/End: Original strand, 17261103 - 17261240
Alignment:
Q  235 ctccatcttcttgtactacatatttaattttagttgccaacattttatacaatatagtgttatgttaacgtaaatatattatgaaatctatttcaattaa 334  Q
    |||||| ||||||| ||||| || || ||||||||| |||| |||| ||| | ||||||||||||||| |||||| |||||||        |||||| ||    
T  17261103 ctccatattcttgtgctacaaatatagttttagttgtcaactttttgtactacatagtgttatgttaatgtaaatgtattatg--------ttcaataaa 17261194  T
Q  335 taaaatgtgttgagttattaatttttgttgtcaattttaaattatgt 381  Q
    |||||| || ||| ||||||| ||||||| | |||||||||||||||    
T  17261195 taaaatatgctgaattattaaattttgttat-aattttaaattatgt 17261240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 389
Target Start/End: Original strand, 18632264 - 18632363
Alignment:
Q  290 agtgttatgttaacgtaaatatattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaa 389  Q
    ||||||| ||||  ||||||||| ||| || |||  || ||||||||||||||||||  ||||||| |||| |||||||||||| || |||||| |||||    
T  18632264 agtgttaagttattgtaaatataatataaattcttctttaattaataaaatgtgttgtattattaaattttattgtcaattttatatcatgtcactttaa 18632363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 390
Target Start/End: Complemental strand, 39228943 - 39228841
Alignment:
Q  288 atagtgttatgttaacgtaaatatattatgaaat-ctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattt 386  Q
    |||| |||||| ||| ||||| ||||||| |||| ||||| ||||||||||| |||||||| ||  ||| ||||||||| ||||||| ||||||||| ||    
T  39228943 atagagttatgctaatgtaaacatattataaaattctatt-caattaataaattgtgttgaatttataaattttgttgtaaattttatattatgtcactt 39228845  T
Q  387 taat 390  Q
    ||||    
T  39228844 taat 39228841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 53967209 - 53967247
Alignment:
Q  357 ttttgttgtcaattttaaattatgtcattttaataaatt 395  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  53967209 ttttgttgacaattttaaattatgtcattttaataaatt 53967247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 52975275 - 52975220
Alignment:
Q  357 ttttgttgtcaattttaaattatgtcattttaataaattttgctgaactaataaatt 413  Q
    ||||||||||||||||||||||||| ||||||||| ||| || |||| |||||||||    
T  52975275 ttttgttgtcaattttaaattatgt-attttaatatattatgttgaattaataaatt 52975220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 412
Target Start/End: Complemental strand, 18822671 - 18822558
Alignment:
Q  299 ttaacgtaaatatattatgaaatctatttcaattaataaaatgtgttgagttattaatttttgttgtcaattttaaattatgtcattttaataaattttg 398  Q
    |||| |||||| |||||||||||    ||||||||||||| ||  |||| ||| | | |||  ||||||||| |||||||||||||||||  ||||  ||    
T  18822671 ttaatgtaaatgtattatgaaattgtgttcaattaataaattgcattgaattaatcaatttgattgtcaattataaattatgtcattttagcaaatcatg 18822572  T
Q  399 ctgaactaataaat 412  Q
     |||||||||||||    
T  18822571 ttgaactaataaat 18822558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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