View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_31 (Length: 320)
Name: NF17326_low_31
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 40024147 - 40024454
Alignment:
| Q |
1 |
ggaaattatctaattgtttataagttttagctgttcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatttttcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40024147 |
ggaaattatctaattgtttataagttttagctgtgcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatttttcac |
40024246 |
T |
|
| Q |
101 |
tgttgtatatgtttgttgattttttcttaatttgtcatgttttagctttagttgtgcaagatactcttgtttgatacatatacatatgtttgttgaattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40024247 |
tgttgtatatgtttgttgattttttcttaatttgtcatgttttagctttagttgtgcaagatactcttgtttgatacatgtacatatgtttgttgaattt |
40024346 |
T |
|
| Q |
201 |
tgggtaggacctgtggttctcaatttgttatgttttagctgtagctgtgcaagatactattattagatacatgatacttgtgaattttggtcttacaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40024347 |
tgggtaggacctgtggttctcaatttgttatgttttagctgtagctgtgcaagatactattattagatacatgatacttgtgaattttggtcttacaaat |
40024446 |
T |
|
| Q |
301 |
tttatatt |
308 |
Q |
| |
|
|||||||| |
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| T |
40024447 |
tttatatt |
40024454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 197 - 308
Target Start/End: Original strand, 40137989 - 40138101
Alignment:
| Q |
197 |
attttgggtaggacc-tgtggttctcaatttgttatgttttagctgtagctgtgcaagatactattattagatacatgatacttgtgaattttggtctta |
295 |
Q |
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|||||| |||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||| |||||||||||| ||| |
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| T |
40137989 |
attttgagtaggaccctgtggttttcaatttgttatgttttagatgtagctgtgcaaaatactattgtttgatacatgatactagtgaattttggtgtta |
40138088 |
T |
|
| Q |
296 |
caaattttatatt |
308 |
Q |
| |
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||| ||||||||| |
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| T |
40138089 |
caagttttatatt |
40138101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 308
Target Start/End: Original strand, 40025815 - 40025933
Alignment:
| Q |
190 |
ttgttgaattttgggtaggac-ctgtggttctcaatttgttatgttttagctgtagctgtgcaagatactattattagatacatgatacttgtgaatttt |
288 |
Q |
| |
|
||||||| ||||| |||||| || ||||||||||||| ||||||||||||||||||||||||| ||||||| || | ||||||||||| ||| || || |
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| T |
40025815 |
ttgttgagttttgaataggactctctggttctcaattttttatgttttagctgtagctgtgcaaagtactattgtttgctacatgatactagtg-atctt |
40025913 |
T |
|
| Q |
289 |
ggtcttacaaattttatatt |
308 |
Q |
| |
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||| |||||| ||||||||| |
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| T |
40025914 |
ggtgttacaagttttatatt |
40025933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 308
Target Start/End: Original strand, 40024467 - 40024586
Alignment:
| Q |
184 |
atatgtttgttgaattttgggtaggacctg-tggttctcaatttgttatgttttagctgtagctgtgcaagatactattattagatacatgatacttgtg |
282 |
Q |
| |
|
||||||||||||| |||| |||||||||| || |||| ||||||||||| |||||||||||||| |||||||| || ||||||||||||| ||| |
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| T |
40024467 |
atatgtttgttgactttttggtaggaccttatgtttcttaatttgttatg------ctgtagctgtgcaaaatactattgtttgatacatgatactggtg |
40024560 |
T |
|
| Q |
283 |
aattttggtcttacaaattttatatt |
308 |
Q |
| |
|
||||||||| |||| | ||||||||| |
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|
| T |
40024561 |
aattttggtgttaccagttttatatt |
40024586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 40024388 - 40024485
Alignment:
| Q |
28 |
tagctgttcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatttttcactgttgtatatgtttgttgatttttt |
125 |
Q |
| |
|
||||||| |||||||| ||| || |||||| ||||| |||||||||||| |||| | ||| ||||||||||| | |||||||||||||||| ||||| |
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| T |
40024388 |
tagctgtgcaagatactattattagatacatgatacttgtgaattttggtcttacaaattttatatttttcacagctgtatatgtttgttgacttttt |
40024485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 40024520 - 40024589
Alignment:
| Q |
28 |
tagctgttcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatattttt |
97 |
Q |
| |
|
||||||| ||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||| |||||||| |
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|
| T |
40024520 |
tagctgtgcaaaatactattgtttgatacatgatactggtgaattttggtgttaccagttttatattttt |
40024589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 40137729 - 40137810
Alignment:
| Q |
228 |
ttatgttttagctgtagctgtgcaagatactattattagatacatgatacttgtgaattttggtcttacaaattttatattc |
309 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||| || ||||||||||||| ||||||| || | |||||| |||||||||| |
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| T |
40137729 |
ttatgttttagctgtagctttgcaagatgccattgtttgatacatgatactagtgaattctgttgttacaagttttatattc |
40137810 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 40137751 - 40137839
Alignment:
| Q |
36 |
caagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatttttcactgttgtatatgtttgttgattttt |
124 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||||||| || |||||| ||||| ||||| ||||||| ||||||||||||||| |||| |
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| T |
40137751 |
caagatgccattgtttgatacatgatactagtgaattctgttgttacaagttttatattcatcactgtggtatatgtttgttgaatttt |
40137839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 40138035 - 40138115
Alignment:
| Q |
28 |
tagctgttcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatttttcactgttgtat |
108 |
Q |
| |
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||||||| ||| |||| ||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
40138035 |
tagctgtgcaaaatactattgtttgatacatgatactagtgaattttggtgttacaagttttatatttttggctgttgtat |
40138115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 2419276 - 2419206
Alignment:
| Q |
184 |
atatgtttgttgaattttgggtagga-cctgtggttctcaatttgttatgttttagctgtagctgtgcaag |
253 |
Q |
| |
|
||||||||||| ||||||| |||||| ||| || ||||||||||||||||||||||||||| |||||||| |
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|
| T |
2419276 |
atatgtttgttaaattttgagtaggagcctatgattctcaatttgttatgttttagctgtatttgtgcaag |
2419206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 2419134 - 2419033
Alignment:
| Q |
199 |
tttgggtaggac-ctgtggttctcaatttgttatgttttagctgtagctgtgcaagatactattattagatacatgatacttgtgaattttggtcttaca |
297 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||| ||| |||||| | |||| || ||||||||||| | |||||||||||| ||||| |
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| T |
2419134 |
tttgagtaggactctgtggttctcaatttgttatgttttagatgt-----tgcaag-ttttattgtttgatacatgatagtagtgaattttggtgttaca |
2419041 |
T |
|
| Q |
298 |
aattttat |
305 |
Q |
| |
|
| |||||| |
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|
| T |
2419040 |
agttttat |
2419033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 2419317 - 2419266
Alignment:
| Q |
66 |
gtgaattttggtgttacgagtttcatatttttcactgttgtatatgtttgtt |
117 |
Q |
| |
|
||||||||||||||| | ||||| ||||| |||||||| ||||||||||||| |
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|
| T |
2419317 |
gtgaattttggtgttgcaagttttatattcttcactgtggtatatgtttgtt |
2419266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 40137822 - 40137892
Alignment:
| Q |
184 |
atatgtttgttgaattttgggtagga-cctgtggttctcaatttgttatgttttagctgtagctgtgcaag |
253 |
Q |
| |
|
||||||||||||||||||| |||||| ||| || |||||| | |||||||||||| || ||| |||||||| |
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|
| T |
40137822 |
atatgtttgttgaattttgagtaggagcctatgcttctcagtatgttatgttttacctctagttgtgcaag |
40137892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 40025868 - 40025951
Alignment:
| Q |
28 |
tagctgttcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatttttcactgttgtatatgt |
112 |
Q |
| |
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||||||| ||| ||| |||||||| |||| ||||| |||| | |||||||||| ||||| ||||||||||||| ||||||||| |
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| T |
40025868 |
tagctgtgcaaagtactattgtttgctacatgatactagtga-tcttggtgttacaagttttatatttttcactgctgtatatgt |
40025951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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