View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_low_36 (Length: 290)

Name: NF17326_low_36
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_low_36
NF17326_low_36
[»] chr5 (1 HSPs)
chr5 (13-196)||(33224431-33224631)
[»] chr7 (2 HSPs)
chr7 (13-196)||(20623563-20623763)
chr7 (13-196)||(12904624-12904817)
[»] chr4 (2 HSPs)
chr4 (121-196)||(34856421-34856496)
chr4 (23-64)||(34856493-34856534)
[»] chr2 (1 HSPs)
chr2 (76-146)||(14885805-14885874)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 33224431 - 33224631
Alignment:
Q  13 ttaacaacactgttcttatgtgaggcggctggtgtgtttgggaagaagcatacat-----------------aactgttagtggatatttagggtttgag 95  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |                 | |||||||||||||||||||||||| |    
T  33224431 ttaacaacactgttcttatgtgaggcggctgatgtgtttgggaagaagcatactttcttatgctgatgttgaacctgttagtggatatttagggtttggg 33224530  T
Q  96 tttgtggtctgatgggcttatcaaacataggcccatttttaatgtttcatggatataattgctcaatatactcccgtatcaacaaaaataacaaagcaat 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33224531 tttgtggtctgatgggcttatcaaacataggcccatttttaatgtttcatggatataattgctcaatatactcccgtatcaacaaaaataacaaagcaat 33224630  T
Q  196 g 196  Q
    |    
T  33224631 g 33224631  T

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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 20623763 - 20623563
Alignment:
Q  13 ttaacaacactgttcttatgtgaggcggctggtgtgtttgggaagaagcatacat-----------------aactgttagtggatatttagggtttgag 95  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |                 | |||||||||||||||||||||||| |    
T  20623763 ttaacaacactgttcttatgtgaggtggctggtgtgtttgggaagaagcatactttcttatgctgatgttgaacctgttagtggatatttagggtttggg 20623664  T
Q  96 tttgtggtctgatgggcttatcaaacataggcccatttttaatgtttcatggatataattgctcaatatactcccgtatcaacaaaaataacaaagcaat 195  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20623663 tttgtggtctgatgggcttatcaaacgtaggcccatttttaatgtttcatggatataattgctcaatatactcccgtatcaacaaaaataacaaagcaat 20623564  T
Q  196 g 196  Q
    |    
T  20623563 g 20623563  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 12904624 - 12904817
Alignment:
Q  13 ttaacaacactgttcttatgtgaggcggctggtgtgtttgggaagaagcatacat-----------------aactgttagtggatatttagggtttgag 95  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||| |                 | || |||||| |||||||||||||| |    
T  12904624 ttaacaacactattgttatgtgaggcggctggtgtgtttgggaagaagcatactttctaatgccgatgttgaatctattagtgaatatttagggtttggg 12904723  T
Q  96 tttgtggtctgatgggcttatcaaacataggcccatttttaatgtttcatggatataattgctcaatatactcccgtatcaac-aaaaataacaaagcaa 194  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||        ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  12904724 tttgtgatctgatgggcttatcaaacatagacccatttttaatgt--------tataactgctcaatatactcccgtatcaacaaaaaataacaaagcaa 12904815  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 34856496 - 34856421
Alignment:
Q  121 cataggcccatttttaatgtttcatggatataattgctcaatatactcccgtatcaacaaaaataacaaagcaatg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34856496 cataggcccatttttaatgtttcatggatataattgctcaatatactcccgtatcaacaaaaataacaaagcaatg 34856421  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 34856534 - 34856493
Alignment:
Q  23 tgttcttatgtgaggcggctggtgtgtttgggaagaagcata 64  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  34856534 tgttcttatgtgaggtggctggtgtgtttgggaagaagcata 34856493  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 14885874 - 14885805
Alignment:
Q  76 gtggatatttagggtttgagtttgtggtctgatgggcttatcaaacataggcccatttttaatgtttcatg 146  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14885874 gtggatatctaaggtttg-gtttgtggtctgatgggcttatcaaacataggcccaattttaatgtttcatg 14885805  T

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