View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17326_low_37 (Length: 288)
Name: NF17326_low_37
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 47299222 - 47299479
Alignment:
| Q |
18 |
actgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47299222 |
actgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggc |
47299321 |
T |
|
| Q |
118 |
tatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47299322 |
tatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaattgtatttggcgaaagaatttgttcgtattcaaaatgg |
47299421 |
T |
|
| Q |
218 |
ttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47299422 |
ttgcatgtaatgcgtggagggtctcttgccattagaatctccctattccacacaggtt |
47299479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 47292615 - 47292872
Alignment:
| Q |
18 |
actgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
47292615 |
actgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcaaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagcgcagc |
47292714 |
T |
|
| Q |
118 |
tatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
47292715 |
tatgtcagaagctctaaagaagaaagatcgatgaactagagaagcagtatcttcttccttaatggtatttggcgaaaaaatttgtttgtattcaagatgg |
47292814 |
T |
|
| Q |
218 |
ttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
47292815 |
ttgcatgtaatgcgtggagggtctcttgccattagaatctccctattccatacaggtt |
47292872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 47267633 - 47267376
Alignment:
| Q |
18 |
actgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| | |
|
|
| T |
47267633 |
actgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaac |
47267534 |
T |
|
| Q |
118 |
tatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatgg |
217 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||| | | ||||||| |||||| || ||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
47267533 |
aatgtctgaagtcctaaagaagaaagattgatgaactagggttgtggtatcttcttccttgattgtatttgacgaaaaaatttgttcgtattcatgatgg |
47267434 |
T |
|
| Q |
218 |
ttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
275 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
47267433 |
ttgcatgtaatgtgtggtgggtctcttgccattagaatctccctattccatacaggtt |
47267376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 47283598 - 47283362
Alignment:
| Q |
18 |
actgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggc |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||| |||| | || || |
|
|
| T |
47283598 |
actgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaaggtgaaatggaatcaagtgacggattgcagc |
47283499 |
T |
|
| Q |
118 |
tatgtcagaagctctaaagaagaaagattgatggacta---gagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaa |
214 |
Q |
| |
|
||||| |||| | |||||||||||||||||||||||| || ||||| ||||| |||||| || |||||| || ||| |||||||| |||||| | |
|
|
| T |
47283498 |
tatgtgagaaagtgtaaagaagaaagattgatggactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattcacga |
47283399 |
T |
|
| Q |
215 |
tggttgcatgtaatgcgtggagggtctcttgccatta |
251 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
47283398 |
tggttgcaagtaatgcgtggagggtctctagccatta |
47283362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 47256852 - 47256593
Alignment:
| Q |
19 |
ctgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggct |
118 |
Q |
| |
|
|||||||||||||||||| || |||||| |||||| ||||||||||||| ||| ||||| || |||||||| |||||||||| |||||| | ||| |
|
|
| T |
47256852 |
ctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcaccgagaaaggtgaagtggaaccaagcgacgaatcgcagct |
47256753 |
T |
|
| Q |
119 |
atgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatg---gtatttggcgaaagaatttgttcgtattcaaaat |
215 |
Q |
| |
|
|||| || | | | |||||||||||||||||||||| | || |||||||| |||||| ||| |||||||||| ||| |||||||| |||||| || |
|
|
| T |
47256752 |
atgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttcttccttgatgtacgtatttggcggaagtatttgttcatattcacgat |
47256653 |
T |
|
| Q |
216 |
ggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
275 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
47256652 |
ggttgcaagtaatgtatggagggtctcttgccattagaatctccctattccatacaggtt |
47256593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 47242728 - 47242465
Alignment:
| Q |
19 |
ctgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaat----gtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgt |
114 |
Q |
| |
|
|||||||||||||||||| || |||||| || ||| |||||||||||| ||| || ||||| ||| ||||||||| |||||||||| ||||| |
|
|
| T |
47242728 |
ctgcaatgcttttgtgcggcagcaccaataatatgcagtgataagatcaaattaatgtagtgcaatgatgaaggtgaattggaaccaagcaacgaatcac |
47242629 |
T |
|
| Q |
115 |
ggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatg---gtatttggcgaaagaatttgttcgtattca |
211 |
Q |
| |
|
||||||| || || | | |||||||||||||||||||||| || |||||||| ||| || ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
47242628 |
agctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgtaggtatttggcgaaagtatttgttcgtattca |
47242529 |
T |
|
| Q |
212 |
aaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
275 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
47242528 |
cgatggttgcatgtaatgtatggagggtctcttgccattagaatctccctattccatacaggtt |
47242465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 47279005 - 47278769
Alignment:
| Q |
18 |
actgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggc |
117 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||| |||||| || |
|
|
| T |
47279005 |
actgcaatgcttttgtacggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaaggtgaaatggaatcaaacgacgaatctcagc |
47278906 |
T |
|
| Q |
118 |
tatgtcag-aagctctaaagaagaaagattgatggacta---gagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaa |
213 |
Q |
| |
|
|||| || |||| ||||||||||||| |||||||||| || |||| ||||| |||||| || |||||| |||||| ||||||||||||||| |
|
|
| T |
47278905 |
tatgcgagtaagc-gtaaagaagaaagagtgatggactatggtagcagcaacatcttcttccttgttgatatttgacgaaagtatttgttcgtattcatg |
47278807 |
T |
|
| Q |
214 |
atggttgcatgtaatgcgtggagggtctcttgccatta |
251 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
47278806 |
atggttgcaagtaacacgtggagggtctcttgccatta |
47278769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 32731395 - 32731136
Alignment:
| Q |
19 |
ctgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggct |
118 |
Q |
| |
|
|||||||||||||||||| || |||||| |||||| | |||||||||| ||||| ||||| ||| ||||||||| |||||||||| ||||| | ||| |
|
|
| T |
32731395 |
ctgcaatgcttttgtgcggcagcaccaataacatgcactgataagatcaaatgtagtgcaatgatgaaggtgaattggaaccaagcaacgaatcgcagct |
32731296 |
T |
|
| Q |
119 |
atgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatg---gtatttggcgaaagaatttgttcgtattcaaaat |
215 |
Q |
| |
|
|||| || || | | |||||||||||||||||||||| || |||||||| ||| || ||| |||||||||||||| ||||||||||||||| || |
|
|
| T |
32731295 |
atgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgtaggtatttggcgaaagtatttgttcgtattcacgat |
32731196 |
T |
|
| Q |
216 |
ggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
275 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
32731195 |
ggttgcatgtaatacatggagggtctcttgccattagaatctccctattccatacaggtt |
32731136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University