View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_39 (Length: 285)
Name: NF17326_low_39
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 47198081 - 47197816
Alignment:
| Q |
16 |
catacatatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggactcttaacctcattagccactttactagctctgagtatg |
115 |
Q |
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| T |
47198081 |
catacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggactcttaacctcattagccactttactagctctgagtatg |
47197982 |
T |
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| Q |
116 |
tcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaacccctttcaatgagactgttgggagtat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47197981 |
tcttcaaactcgggctcaatattttcaacaccacgaatctttgtaagaacggctttccctttctcctcgaaacccctttcaatgagactgttgggagtat |
47197882 |
T |
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| Q |
216 |
catccactataagagaccccactgtaagcataactgctggaatgattgctccggcctatgctactc |
281 |
Q |
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| T |
47197881 |
catccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgatactc |
47197816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 47185199 - 47184944
Alignment:
| Q |
16 |
catacatatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggactcttaacctcattagccactttactagctctgagtatg |
115 |
Q |
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||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
47185199 |
catacatatggcaattatcaaaggagggagattgtgggacttaacaagatccttgaaggggctcttgacctcattagccactttactagctctgagtatg |
47185100 |
T |
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| Q |
116 |
tcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaacccctttcaatgagactgttgggagtat |
215 |
Q |
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| T |
47185099 |
tcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaacccctttcaatgagactgttgggagtat |
47185000 |
T |
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| Q |
216 |
catccactataagagaccccactgtaagcataactgctggaatgattgctccggcc |
271 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47184999 |
catccactatgagagaccccactgtaagcataactgctggaatgattgctccggcc |
47184944 |
T |
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