View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_low_43 (Length: 274)

Name: NF17326_low_43
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_low_43
NF17326_low_43
[»] chr1 (5 HSPs)
chr1 (12-274)||(40023978-40024240)
chr1 (11-106)||(40137321-40137415)
chr1 (12-76)||(40137513-40137577)
chr1 (208-274)||(40024520-40024586)
chr1 (208-274)||(40138035-40138101)
[»] chr6 (8 HSPs)
chr6 (12-132)||(6756772-6756889)
chr6 (12-76)||(6773253-6773317)
chr6 (12-132)||(6773584-6773701)
chr6 (12-76)||(6756633-6756697)
chr6 (12-76)||(6765201-6765265)
chr6 (16-76)||(6773445-6773505)
chr6 (34-108)||(6756425-6756499)
chr6 (53-106)||(6765363-6765416)
[»] scaffold0299 (4 HSPs)
scaffold0299 (12-132)||(20253-20370)
scaffold0299 (12-76)||(15052-15116)
scaffold0299 (12-76)||(20625-20689)
scaffold0299 (40-106)||(14531-14597)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 40023978 - 40024240
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggatacggaagcgatccgggacaaagcaaggaaattatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40023978 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggatacggaagcgatccgggacaaagcaaggaaattatt 40024077  T
Q  112 ttttaaaaaggaaagacaagaaaaagggttcttagagtcacggcgtaaaagaaaaggtaaggctatgaaggaaattatctaattgtttataagttttagc 211  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40024078 ttttaaaaaggaaagacaagaaaaagggttcttagagtctcggcgtaaaagaaaaggtaaggctatgaaggaaattatctaattgtttataagttttagc 40024177  T
Q  212 tgttcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatt 274  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40024178 tgtgcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatt 40024240  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 40137321 - 40137415
Alignment:
Q  11 tcaaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggatacggaagcgatccgggacaaagcaaggaaa 106  Q
    |||||||||||| ||||||||||||||| ||||||| || ||||||||||| ||||| ||||||||  | ||||||| |||||||| |||||||||    
T  40137321 tcaaaaagttgggaagacatcaattggaaagacatcagggatgaagaaaaattgttt-gtcgggatttgaaagcgattcgggacaaggcaaggaaa 40137415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 40137513 - 40137577
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggat 76  Q
    ||||||||||||||||||||||||||  ||| ||  || ||||||||||||||||||||||||||    
T  40137513 caaaaagttggaaagacatcaattgggaagagataagggatgaagaaaaactgtttggtcgggat 40137577  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 40024520 - 40024586
Alignment:
Q  208 tagctgttcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatt 274  Q
    ||||||| ||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||| |||||    
T  40024520 tagctgtgcaaaatactattgtttgatacatgatactggtgaattttggtgttaccagttttatatt 40024586  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 40138035 - 40138101
Alignment:
Q  208 tagctgttcaagataccattgtttgatacaggataccggtgaattttggtgttacgagtttcatatt 274  Q
    ||||||| ||| |||| ||||||||||||| |||||  ||||||||||||||||| ||||| |||||    
T  40138035 tagctgtgcaaaatactattgtttgatacatgatactagtgaattttggtgttacaagttttatatt 40138101  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 6756889 - 6756772
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggatacggaagcgatccgggacaaagcaaggaaattatt 111  Q
    ||||||||||| ||||||||||||| | ||||||| || ||||||||||| ||||||||||||||  | ||| ||| |||||||| ||||||||   | |    
T  6756889 caaaaagttgggaagacatcaattgaaaagacatcagggatgaagaaaaattgtttggtcgggatttgaaagtgattcgggacaaggcaaggaa---act 6756793  T
Q  112 ttttaaaaaggaaagacaaga 132  Q
    |||||||||||||||||||||    
T  6756792 ttttaaaaaggaaagacaaga 6756772  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 6773317 - 6773253
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggat 76  Q
    ||||||||||||||||||||||||||| ||||||  || ||||||||||||||||||||||||||    
T  6773317 caaaaagttggaaagacatcaattggaaagacataagggatgaagaaaaactgtttggtcgggat 6773253  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 6773701 - 6773584
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggatacggaagcgatccgggacaaagcaaggaaattatt 111  Q
    |||||||| |||||||||||||||||| ||||||  || ||||||||||||||||||||||||||  | | || || | |||||| || |||||   |||    
T  6773701 caaaaagtcggaaagacatcaattggaaagacataagggatgaagaaaaactgtttggtcgggatttgaatgcaattcaggacaaggccaggaa---att 6773605  T
Q  112 ttttaaaaaggaaagacaaga 132  Q
    |||||||||||||| ||||||    
T  6773604 ttttaaaaaggaaatacaaga 6773584  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 6756697 - 6756633
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggat 76  Q
    |||||||| |||||||||||||||||  ||||||  || || |||||||||||||||||||||||    
T  6756697 caaaaagtaggaaagacatcaattggtaagacataagggataaagaaaaactgtttggtcgggat 6756633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 6765265 - 6765201
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggat 76  Q
    ||||||||||||||||||||||||| | ||| ||  || || |||||||||||||||||||||||    
T  6765265 caaaaagttggaaagacatcaattgaaaagaaataagggataaagaaaaactgtttggtcgggat 6765201  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 6773505 - 6773445
Alignment:
Q  16 aagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggat 76  Q
    |||||||||||| |||||||||  ||||||  || ||||||||||||||||||||||||||    
T  6773505 aagttggaaagaaatcaattgggaagacataagggatgaagaaaaactgtttggtcgggat 6773445  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 6756499 - 6756425
Alignment:
Q  34 ttggagagacatcgggaatgaagaaaaactgtttggtcgggatacggaagcgatccgggacaaagcaaggaaatt 108  Q
    ||||| ||||||  || ||||||||||||||||||||||||||  | | ||||| | |||||| |||||||||||    
T  6756499 ttggaaagacataagggatgaagaaaaactgtttggtcgggatttgaatgcgattcaggacaaggcaaggaaatt 6756425  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 6765416 - 6765363
Alignment:
Q  53 gaagaaaaactgtttggtcgggatacggaagcgatccgggacaaagcaaggaaa 106  Q
    ||||||||| ||||||||||||||  | ||||||| |||||||| |||||||||    
T  6765416 gaagaaaaattgtttggtcgggatttgaaagcgattcgggacaaggcaaggaaa 6765363  T

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Target: scaffold0299 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 20253 - 20370
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggatacggaagcgatccgggacaaagcaaggaaattatt 111  Q
    |||||| |||||||||||||||||||| ||||||  || ||||||||||| ||||||||||||||  | | ||||| |  ||||| || |||||   |||    
T  20253 caaaaatttggaaagacatcaattggaaagacataagggatgaagaaaaattgtttggtcgggatttgaatgcgattcaagacaaggccaggaa---att 20349  T
Q  112 ttttaaaaaggaaagacaaga 132  Q
    |||||||||||||||||||||    
T  20350 ttttaaaaaggaaagacaaga 20370  T

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Target: scaffold0299; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 15052 - 15116
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggat 76  Q
    |||||||||||||||| |||||||||| ||||||  || ||||||||||||| ||||||||||||    
T  15052 caaaaagttggaaagatatcaattggaaagacataagggatgaagaaaaactttttggtcgggat 15116  T

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Target: scaffold0299; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 20625 - 20689
Alignment:
Q  12 caaaaagttggaaagacatcaattggagagacatcgggaatgaagaaaaactgtttggtcgggat 76  Q
    ||||||||||||| ||||||||||||| ||||||  || ||||||||||||| ||||||||||||    
T  20625 caaaaagttggaaggacatcaattggaaagacataagggatgaagaaaaactttttggtcgggat 20689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 14531 - 14597
Alignment:
Q  40 agacatcgggaatgaagaaaaactgtttggtcgggatacggaagcgatccgggacaaagcaaggaaa 106  Q
    ||||||| || ||||||||||| ||||||||||||||  | ||||||| |||||||| |||||||||    
T  14531 agacatcagggatgaagaaaaattgtttggtcgggatttgaaagcgattcgggacaaggcaaggaaa 14597  T

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