View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_44 (Length: 270)
Name: NF17326_low_44
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 1172758 - 1173004
Alignment:
| Q |
14 |
acaaacaataaattcgatagcgataatatatatacatgctgaaattaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtga |
113 |
Q |
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| T |
1172758 |
acaaacaataaattcgatagcgataatatatatacatgctgaaattaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtga |
1172857 |
T |
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| Q |
114 |
agaattgtgaataacaagcaaattaaacgacgattataactctcaatatcgactgactctttttgtttccctcaagaagatgtatgtattccttc--aag |
211 |
Q |
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| T |
1172858 |
agaattgtgaataacaagc-----aaacgacgattataactctcaatatcgactgactctttttgtttccctcaagaacatttatgtattcgttcttaag |
1172952 |
T |
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| Q |
212 |
tagggttgaggtatttatatgaagtgttaccaaagaaataaagcaacttcat |
263 |
Q |
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| T |
1172953 |
tagggttgaggtatttatatgaagtgttaccaaagaaataaagcaacttcat |
1173004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 1165110 - 1165149
Alignment:
| Q |
157 |
caatatcgactgactctttttgtttccctcaagaagatgt |
196 |
Q |
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| T |
1165110 |
caatgtcgactgactcttttggtttccctcaagaagatgt |
1165149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 1182482 - 1182525
Alignment:
| Q |
81 |
atacctgaaag-tgagaaacttgaaacaaagtgaagaattgtga |
123 |
Q |
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| T |
1182482 |
atacctgaaaggtgagaaacttgaaacaaagtgaagacttgtga |
1182525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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