View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17326_low_49 (Length: 255)
Name: NF17326_low_49
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 45279703 - 45279475
Alignment:
| Q |
17 |
catttgtcctgcccttctgaggtatgcttcaaggactcgtctattgtgagatattcaaatcgcgtcaaaggaacattgtcaaagggaaaactcattgtta |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45279703 |
catttgtcctccccttctgaggtatgcttcaaggactcgtctattgtgagatattcaaatcgcgtcaaaggaacattgtcaaagggaaaactcattgtta |
45279604 |
T |
|
| Q |
117 |
tagatggaatgaagaccaaggttcttgtgtgggttaaggtcactagtgtttatgttgagagttataagtctgacaaagtatggtttactaccactggtgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45279603 |
tagatggaatgaagaccaaggttcttgtgtgggttaaggtcactagtgtttatgttgagagttataagtctgacaaagtatggtttactaccactggtgt |
45279504 |
T |
|
| Q |
217 |
taaaaaatcaaggcctaaagatgcctatg |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45279503 |
taaaaaatcaaggcctaaagatgcctatg |
45279475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University