View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_53 (Length: 243)
Name: NF17326_low_53
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_53 |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 26838577 - 26838714
Alignment:
| Q |
106 |
ttccgctcatcgtaatcgttaggagccatcatttttcatgtgtttttgaacctatataatttagcatggttgcagtagagtctactctaacgccatagat |
205 |
Q |
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| T |
26838577 |
ttccgctcattgtaatccttatgagccatcatttttcatgtgtttttgaacctatatattttagcatggttgcattagagtctactccaacgccatagat |
26838676 |
T |
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| Q |
206 |
ttaaacacactcaaaaggatgaccaagtcctcacaaca |
243 |
Q |
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| T |
26838677 |
ttaaacacactcaaaaggatgaccaagtcctcacaaca |
26838714 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 26837468 - 26837554
Alignment:
| Q |
23 |
cccaaataaacattaagatgacttaccatgacaattgcccatttaccttcaacacaccagtaacttatatgacagcaaatacattcc |
109 |
Q |
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| T |
26837468 |
cccaaataaccattaagatgccataccatgacagttgcccatttaccttcaacacatcagtaacttatatgacggcaaatacattcc |
26837554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 50973679 - 50973816
Alignment:
| Q |
106 |
ttccgctcatcgtaatcgttaggagccatcatttttcatgtgtttttgaacctatataatttagcatggttgcagtagagtctactctaacgccatagat |
205 |
Q |
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| T |
50973679 |
ttccgctcactgtaatccttatgagccatcattgttcatgtgtttttgaacctatatattttagcatggttgcattagagtctgctccaacgccatagat |
50973778 |
T |
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| Q |
206 |
ttaaacacactcaaaaggatgaccaagtcctcacaaca |
243 |
Q |
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| T |
50973779 |
ttaaacacactcaaaaggatgaccaagtcctcacaaca |
50973816 |
T |
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