View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_59 (Length: 233)
Name: NF17326_low_59
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 38621500 - 38621716
Alignment:
| Q |
1 |
gagtggctttcgaaataaaggttnnnnnnntatgtgaaagaatgttaaaactttcaatactgctgaacttagtttgaagtttgaaccaaccatttttcat |
100 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38621500 |
gagtggcttttgaaataaaggttaaaaaaatatgtgaaagaatgttaaaactttcaatactgctgaacttagtttgaagtttgaaccaaccatttttcat |
38621599 |
T |
|
| Q |
101 |
gtcaatatgtttttctgtataagttttgctgagaataagattacagcaaatcactcaacagaatatgcctactatgatgcaaagtaaaataaggaaacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38621600 |
gtcaatatgtttttctgtataagttttgctgagaataagattacagcaaatcactcaacagaatatgcctactatgatgcaaagtaaaataaggaaacac |
38621699 |
T |
|
| Q |
201 |
atatcaagaatctatat |
217 |
Q |
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||||||||||||||||| |
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| T |
38621700 |
atatcaagaatctatat |
38621716 |
T |
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