View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17326_low_7 (Length: 588)
Name: NF17326_low_7
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 12 - 569
Target Start/End: Complemental strand, 4236079 - 4235522
Alignment:
| Q |
12 |
agagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236079 |
agagagttcagatattgttatattagatgacaattttgcatctattgtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcatt |
4235980 |
T |
|
| Q |
112 |
caatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttcaattattatggg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4235979 |
caatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttcaattattatggg |
4235880 |
T |
|
| Q |
212 |
tgaatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaagaacctgttggtagaacaaagcctct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4235879 |
tgaatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaagaacctgttggtagaacaaagcctct |
4235780 |
T |
|
| Q |
312 |
tataactaacattatgtggaggaatcttttgtcacaagctttgtaccaaatagtaattttattaactcttcagtttaaaggtgagagtatttttggtgtg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4235779 |
tataactaacattatgtggaggaatcttttgtcacaagctttgtaccaaatagtaattttattaactcttcagtttaaaggtgagagtatttttggtgtg |
4235680 |
T |
|
| Q |
412 |
acttcgaaggtaaatgacacattaatattcaatacatttgttctttgtcaagtgtttaatgagtttaatgcaaggaaattggagaagaagaatgtgtttg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4235679 |
acttcgaaggtaaatgacacattaatattcaatacatttgttctttgtcaagtgtttaatgagtttaatgcaaggaaattggagaagaagaatgtgtttg |
4235580 |
T |
|
| Q |
512 |
aagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttca |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4235579 |
aagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttca |
4235522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 194 - 514
Target Start/End: Original strand, 30441409 - 30441730
Alignment:
| Q |
194 |
cagttcaattattatgggtgaatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaagaacct-g |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| || | | |
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|
| T |
30441409 |
cagttcaattattatgggtgaatttgattatggatacattagatgctttggctcttgcaactgaaaaacctactaaggaactaatggataaaaaaaattg |
30441508 |
T |
|
| Q |
293 |
ttggtagaacaaagcctcttataactaacattatgtggaggaatcttttgtcacaagctttgtaccaaatagtaattttattaactcttcagtttaaagg |
392 |
Q |
| |
|
||||||||| |||||||||||| || | ||||| || |||||||||| |||||||||| ||||| |||||| |||||| || ||| |||| || ||||| |
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|
| T |
30441509 |
ttggtagaataaagcctcttattacaagcattacgtagaggaatcttatgtcacaagccttgtatcaaatatcaattttgttgacttttcaattcaaagg |
30441608 |
T |
|
| Q |
393 |
tgagagtatttttggtgtgacttcgaaggtaaatgacacattaatattcaatacatttgttctttgtcaagtgtttaatgagtttaatgcaaggaaattg |
492 |
Q |
| |
|
||| | || |||||||||||| | ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30441609 |
tgacaataattttggtgtgacattaaaggtaaatgacacattgatatttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattg |
30441708 |
T |
|
| Q |
493 |
gagaagaagaatgtgtttgaag |
514 |
Q |
| |
|
||||| || ||||||||||||| |
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|
| T |
30441709 |
gagaacaaaaatgtgtttgaag |
30441730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 12 - 569
Target Start/End: Complemental strand, 6185203 - 6184646
Alignment:
| Q |
12 |
agagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185203 |
agagagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgttaaactggggaagatgtgtttacaacaacattcaaaaattcatt |
6185104 |
T |
|
| Q |
112 |
caatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttcaattattatggg |
211 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| ||||| || |||||||||||||| || ||||| || ||||||||||||||||||||||||| |
|
|
| T |
6185103 |
caatttcaactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtttcagccggtgaagtaccattaacagcagttcaattattatggg |
6185004 |
T |
|
| Q |
212 |
tgaatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaagaacctgttggtagaacaaagcctct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
6185003 |
tgaatttgattatggatacattaggtgctttggctcttgcaactgaaaaacctactaaggaattaatggatgaaaaaccagttggtagaacaaagcctct |
6184904 |
T |
|
| Q |
312 |
tataactaacattatgtggaggaatcttttgtcacaagctttgtaccaaatagtaattttattaactcttcagtttaaaggtgagagtatttttggtgtg |
411 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||| ||||||||||||| |
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|
| T |
6184903 |
tattactaacattatgtggaggaatcttgtgtcacaagctttgtaccaaataataattttgttaactcttcaattcaaaggtgaggatatttttggtgtg |
6184804 |
T |
|
| Q |
412 |
acttcgaaggtaaatgacacattaatattcaatacatttgttctttgtcaagtgtttaatgagtttaatgcaaggaaattggagaagaagaatgtgtttg |
511 |
Q |
| |
|
|| || ||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
6184803 |
acatcaaaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttg |
6184704 |
T |
|
| Q |
512 |
aagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttca |
569 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6184703 |
aaggaatattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttca |
6184646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 345 - 544
Target Start/End: Original strand, 29475752 - 29475953
Alignment:
| Q |
345 |
acaagctttgtaccaaatagtaattttattaactcttcagtttaaaggtgagagtatttttggtgtgacttcgaaggtaaatgacacattaatattc--a |
442 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| ||||||||||| | |||||||||| |||| || ||||||||||||| ||| |||||| | |
|
|
| T |
29475752 |
acaagctttgttccaaatagtaattttgttaactcttcaatttaaaggtgatattatttttggtatgacatcaaaggtaaatgacatattgatattctta |
29475851 |
T |
|
| Q |
443 |
atacatttgttctttgtcaagtgtttaatgagtttaatgcaaggaaattggagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttggg |
542 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||| ||| |
|
|
| T |
29475852 |
atacatttgctctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtttttgaagggatatgtaaaagcaagttgttttaggg |
29475951 |
T |
|
| Q |
543 |
aa |
544 |
Q |
| |
|
|| |
|
|
| T |
29475952 |
aa |
29475953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 19592962 - 19592829
Alignment:
| Q |
12 |
agagagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcatt |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19592962 |
agagagctcagatattgttatattagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcatt |
19592863 |
T |
|
| Q |
112 |
caatttcaattaacagtgaatgtggcagcacttgttataaatt |
154 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| |
|
|
| T |
19592862 |
caatt---------agtgaatgtggcagcacttgttatcaatt |
19592829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 73 - 279
Target Start/End: Complemental strand, 38356962 - 38356756
Alignment:
| Q |
73 |
tggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcag |
172 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||| |||||| ||||||||||||| ||||||||||| ||||| ||| | || || ||||| |
|
|
| T |
38356962 |
tggggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaactttattgcagcagtttctt |
38356863 |
T |
|
| Q |
173 |
caggcgaagttccgttaacagcagttcaattattatgggtgaatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaagga |
272 |
Q |
| |
|
| || || ||||| |||||| |||||||| | | ||||||||| | |||||||||||| ||||||| ||||| || ||||| |||| ||||| ||||| |
|
|
| T |
38356862 |
ctggtgatgttcccttaacaacagttcaacttctttgggtgaatctcattatggatacactaggtgctttggcactagcaacagaaaggcctacaaagga |
38356763 |
T |
|
| Q |
273 |
tttaatg |
279 |
Q |
| |
|
|||||| |
|
|
| T |
38356762 |
gttaatg |
38356756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 344 - 479
Target Start/End: Complemental strand, 19592771 - 19592636
Alignment:
| Q |
344 |
cacaagctttgtaccaaatagtaattttattaactcttcagtttaaaggtgagagtatttttggtgtgacttcgaaggtaaatgacacattaatattcaa |
443 |
Q |
| |
|
||||||| |||||||||||| |||| | || ||| |||| || |||||||| | || |||||||||||| |||||||| |||||||| ||||| || |
|
|
| T |
19592771 |
cacaagccttgtaccaaataccaattatgttgacttttcaattcaaaggtgacaataattttggtgtgacactaaaggtaaacgacacattgatatttaa |
19592672 |
T |
|
| Q |
444 |
tacatttgttctttgtcaagtgtttaatgagtttaa |
479 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19592671 |
tacatttgttctatgtcaagtgtttaatgagtttaa |
19592636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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