View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17326_low_8 (Length: 579)

Name: NF17326_low_8
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17326_low_8
NF17326_low_8
[»] chr7 (12 HSPs)
chr7 (18-204)||(328627-328813)
chr7 (284-570)||(328905-329191)
chr7 (31-188)||(26049160-26049320)
chr7 (477-560)||(620106-620189)
chr7 (92-204)||(32838501-32838616)
chr7 (291-400)||(26048886-26048996)
chr7 (86-186)||(47817885-47817985)
chr7 (285-392)||(32838282-32838390)
chr7 (322-396)||(47491472-47491546)
chr7 (424-461)||(32838215-32838252)
chr7 (359-403)||(6483875-6483919)
chr7 (322-402)||(46409207-46409287)
[»] chr4 (6 HSPs)
chr4 (31-204)||(5827067-5827246)
chr4 (291-400)||(5827390-5827500)
chr4 (86-186)||(23668729-23668830)
chr4 (288-399)||(43527539-43527649)
chr4 (430-474)||(52912268-52912312)
chr4 (429-461)||(53721726-53721758)
[»] chr2 (3 HSPs)
chr2 (85-204)||(10240903-10241027)
chr2 (308-402)||(2280076-2280169)
chr2 (288-399)||(8962078-8962188)
[»] chr8 (3 HSPs)
chr8 (86-186)||(9369591-9369692)
chr8 (429-479)||(35971976-35972026)
chr8 (322-402)||(7217013-7217093)
[»] chr5 (4 HSPs)
chr5 (286-402)||(18924343-18924459)
chr5 (312-398)||(29372189-29372276)
chr5 (312-398)||(7509640-7509727)
chr5 (358-402)||(41196379-41196423)
[»] chr3 (1 HSPs)
chr3 (295-399)||(21220463-21220566)
[»] chr1 (5 HSPs)
chr1 (288-403)||(40042748-40042865)
chr1 (284-402)||(4108572-4108689)
chr1 (429-461)||(4108718-4108750)
chr1 (359-403)||(16264077-16264121)
chr1 (358-402)||(48911965-48912009)
[»] scaffold0015 (1 HSPs)
scaffold0015 (338-403)||(35707-35772)
[»] chr6 (1 HSPs)
chr6 (429-477)||(26420744-26420792)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 328627 - 328813
Alignment:
Q  18 ttcttatattcaaattcaaattattgcccatatgtctcagtaaattaatcctcagattcactttcatttcattaatggtaaaagaacaaatctttgacat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  328627 ttcttatattcaaattcaaattattgcccatatgtctcagtaaattaatcctcagattcactttcatttcattaatggtaaaagaacaaatctttgacat 328726  T
Q  118 ataatgaggaataaatcaaacaggattcacactttcataaccattaaaatgaaaagattacatatgcaaaataacacatctgcaact 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  328727 ataatgaggaataaatcaaacaggattcacactttcataaccattaaaatgaaaagattacatatgcaaaataacacatctgcaact 328813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 284 - 570
Target Start/End: Original strand, 328905 - 329191
Alignment:
Q  284 gctggggttgttttggttgataggttgaagaaagtgtgaaaaaa--ttcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggta 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  328905 gctggggttgttttggttgataggttgaagaaagtgtgaaaaaaaattcttgtgtggagggattataataatatcggtgttcttcgccaatctaatggta 329004  T
Q  382 acacttgtcatttttgttatattnnnnnnnntcagnnnnnnnataaggtctcctaccgtaggagacctattgaagtctccaacagtaaacggcgcccaag 481  Q
    |||||||||||||||||||||||        ||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  329005 acacttgtcatttttgttatattaaaaaaa-tcagtttttt-ataaggtctcctaccgtaggagacccattgaagtctccaacagtaaacggcgcccaag 329102  T
Q  482 tatgttgtggtaatcttaatacatccagagactatagtaacaccacctcacacattcaatgatctattatcacttacattcctgatatt 570  Q
    ||||||||  ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  329103 tatgttgtaataatcttgatacatccatagactataataacaccacctcacacattcaatgatctattatcacttacatccctgatatt 329191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 26049320 - 26049160
Alignment:
Q  31 attcaaattattgcccatatgtctcagtaaattaatcctcagattcac--tttcat-ttcattaatggtaaaagaacaaatctttgacatataatgagga 127  Q
    |||||||| | || |||||||||||| |||||||||||||| ||||||  |||||| ||||||||  |||||||||||||||||||||||||||| || |    
T  26049320 attcaaataactgtccatatgtctcaataaattaatcctcaaattcacactttcatattcattaaaagtaaaagaacaaatctttgacatataataagta 26049221  T
Q  128 ataaatcaaacaggattcacactttcataaccattaaaatgaaaagattacatatgcaaaa 188  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  26049220 ataaatcaaacaggattctcactttcataaccattaaaatgaaaagattacatctgcaaaa 26049160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 477 - 560
Target Start/End: Complemental strand, 620189 - 620106
Alignment:
Q  477 ccaagtatgttgtggtaatcttaatacatccagagactatagtaacaccacctcacacattcaatgatctattatcacttacat 560  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  620189 ccaagtatgttgttgtaatcttgatacacccagagactatagtaacaccccctcacacattcaatgatctattatcacttacat 620106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 32838616 - 32838501
Alignment:
Q  92 atggtaaaagaacaaatctttgacatataatgaggaataaatcaaacaggattcacactttcataaccattaaaatgaaaagattacatatgcaa---aa 188  Q
    |||| |||||||||||||||||||||||||||||  |||||| ||||||||||| || |||||||| ||||||||||||||||||| || |||||   ||    
T  32838616 atggaaaaagaacaaatctttgacatataatgagagataaattaaacaggattctcattttcataatcattaaaatgaaaagattaaatctgcaaaagaa 32838517  T
Q  189 taacacatctgcaact 204  Q
    || |||||||||||||    
T  32838516 tagcacatctgcaact 32838501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 291 - 400
Target Start/End: Complemental strand, 26048996 - 26048886
Alignment:
Q  291 ttgttttggttgataggttgaagaaagtgtgaaaaaa-ttcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacacttgt 389  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||| |   ||||||||| |||||||||| ||||||  |||    
T  26048996 ttgttttggttgagaggttgaagaaagtgtgaaaaaaattctagtgtggagggattatagtaagaccaatgttcttcatcaatctaatagtaacatatgt 26048897  T
Q  390 catttttgtta 400  Q
    |||||||||||    
T  26048896 catttttgtta 26048886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 47817885 - 47817985
Alignment:
Q  86 tcattaatggtaaaagaacaaatctttgacatataatgaggaataaatcaaacaggattcacac-tttcataaccattaaaatgaaaagattacatatgc 184  Q
    ||||||| |||||||||||||||| ||||  |||| |||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||||||||||    
T  47817885 tcattaaaggtaaaagaacaaatcgttgatgtatattgaggaataaatgaaacaggattcacacttttcataa-cattcaaatgaaaagattacatatgc 47817983  T
Q  185 aa 186  Q
    ||    
T  47817984 aa 47817985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 32838390 - 32838282
Alignment:
Q  285 ctggggttgttttggttgataggttgaagaaagtgtgaa-aaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaac 383  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| | ||   | |||  |||||||| |||||||||| |||||    
T  32838390 ctggggttgttttggttgagaggttgaagaaagtgtgaaaaaaattctagtgtggagggagtttagcgaaattagtgttcttcatcaatctaatagtaac 32838291  T
Q  384 acttgtcat 392  Q
    || ||||||    
T  32838290 acatgtcat 32838282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 47491472 - 47491546
Alignment:
Q  322 aaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacacttgtcattttt 396  Q
    |||||| ||| |||| ||||||||||||||| ||   ||||||||||||||||||  | ||||| ||||||||||    
T  47491472 aaaaaaatctagtgtagagggattataataagatcagtgttcttcgtcaatctaaccgcaacacatgtcattttt 47491546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Complemental strand, 32838252 - 32838215
Alignment:
Q  424 ataaggtctcctaccgtaggagacctattgaagtctcc 461  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  32838252 ataatgtctcctaccgtaggagacctattcaagtctcc 32838215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 6483919 - 6483875
Alignment:
Q  359 tgttcttcgtcaatctaatggtaacacttgtcatttttgttatat 403  Q
    ||||||||||||||||||  | ||||| |||||||||||||||||    
T  6483919 tgttcttcgtcaatctaaccgcaacacatgtcatttttgttatat 6483875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 46409207 - 46409287
Alignment:
Q  322 aaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacacttgtcatttttgttata 402  Q
    |||||| ||| |||||||||||||||  ||| ||   ||||||||||||||||||  | ||||| || |||||||||||||    
T  46409207 aaaaaaatctagtgtggagggattatggtaagatcagtgttcttcgtcaatctaaccgcaacacatgacatttttgttata 46409287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 5827067 - 5827246
Alignment:
Q  31 attcaaattattgcccatatgtctcagtaaattaatcctcagattcac--tttcat-ttcattaatggtaaaagaacaaatctttgacatataatgagga 127  Q
    |||||||| |||| | |||||||||| |||||||||||||| ||||||  |||||| |||||||| || ||||||||||||||||||||||||||||| |    
T  5827067 attcaaataattgtctatatgtctcaataaattaatcctcaaattcacactttcatattcattaaaggaaaaagaacaaatctttgacatataatgagca 5827166  T
Q  128 ataaatcaaacaggattcacactttcataaccattaaaatgaaaagattacatatgc---aaaataacacatctgcaact 204  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||   ||||||||||||||||||||    
T  5827167 ataaatcaaataggattctcactttcataaccattaaaataaaaagattacatctgcaaaaaaataacacatctgcaact 5827246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 291 - 400
Target Start/End: Original strand, 5827390 - 5827500
Alignment:
Q  291 ttgttttggttgataggttgaagaaagtgt-gaaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacacttgt 389  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||| ||| |   ||||||||| ||| |||||| ||||||  |||    
T  5827390 ttgttttggttgagaggttgaagaaagtgtagaaaaaattctagtgtgaagggattatagtaagaccaatgttcttcatcactctaatagtaacatatgt 5827489  T
Q  390 catttttgtta 400  Q
    |||||||||||    
T  5827490 catttttgtta 5827500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 23668830 - 23668729
Alignment:
Q  86 tcattaatggtaaaagaacaaatctttgacatataatgaggaataaatcaaacaggattcacac-tttcataaccattaaaatgaaaagattacatatgc 184  Q
    ||||||| |||||||||||||||| ||||  |||| | ||||||||||||||||| |||||||| ||| |||| |||| || |||||||||||||| |||    
T  23668830 tcattaaaggtaaaagaacaaatcgttgatgtatattaaggaataaatcaaacagaattcacactttttataaacattcaattgaaaagattacatctgc 23668731  T
Q  185 aa 186  Q
    ||    
T  23668730 aa 23668729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 43527539 - 43527649
Alignment:
Q  288 gggttgttttggttgataggttgaagaaagtgtgaaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacactt 387  Q
    |||||||||| ||||| |||||||||||||||  |||| ||| | ||||| | |||||||| ||  || | |||||||| ||||||||||||| ||||      
T  43527539 gggttgttttagttgagaggttgaagaaagtg-aaaaatattatagtgtgaaaggattatagtatgatcggtgttcttcatcaatctaatggttacacaa 43527637  T
Q  388 gtcatttttgtt 399  Q
     |||||||||||    
T  43527638 ttcatttttgtt 43527649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 52912312 - 52912268
Alignment:
Q  430 tctcctaccgtaggagacctattgaagtctccaacagtaaacggc 474  Q
    ||||||||||||||||||||||| | |||||| || |||||||||    
T  52912312 tctcctaccgtaggagacctattcacgtctcctactgtaaacggc 52912268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 461
Target Start/End: Complemental strand, 53721758 - 53721726
Alignment:
Q  429 gtctcctaccgtaggagacctattgaagtctcc 461  Q
    |||||||||||||||||||||||| ||||||||    
T  53721758 gtctcctaccgtaggagacctattcaagtctcc 53721726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 10241027 - 10240903
Alignment:
Q  85 ttcattaatggtaaaagaacaaatctttgacatataatgaggaataaatcaaaca--ggattcacactttcataaccattaaaatgaaaagattacatat 182  Q
    |||||||| |||||||||||||||| |||| |||||| ||||||| |||||| ||  ||||||||||||||||| ||||| |||||||||||||||||||    
T  10241027 ttcattaaaggtaaaagaacaaatcattgatatataacgaggaatgaatcaaccacgggattcacactttcatatccattcaaatgaaaagattacatat 10240928  T
Q  183 gcaa---aataacacatctgcaact 204  Q
     |||   || |||||||||||||||    
T  10240927 acaaaagaaaaacacatctgcaact 10240903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 402
Target Start/End: Original strand, 2280076 - 2280169
Alignment:
Q  308 ttgaagaaagtgtgaaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacacttgtcatttttgttata 402  Q
    ||||||||||||  |||| ||||| |||||||||||||||| ||| ||  ||||||||||||||| ||| ||| |||  | ||||||||||||||    
T  2280076 ttgaagaaagtga-aaaatattctagtgtggagggattatagtaagatcaatgttcttcgtcaatataacggtgacaagtttcatttttgttata 2280169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 8962078 - 8962188
Alignment:
Q  288 gggttgttttggttgataggttgaagaaagtgtgaaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacactt 387  Q
    |||||| ||| ||||| |||||||||||||||  |||||||| | |||| || |||||||| ||| || | | |||||| ||||||||||||| ||||      
T  8962078 gggttggtttagttgagaggttgaagaaagtga-aaaaaattatagtgttgaaggattatagtaagatcggtcttcttcatcaatctaatggttacacag 8962176  T
Q  388 gtcatttttgtt 399  Q
     |||||||||||    
T  8962177 ttcatttttgtt 8962188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 9369692 - 9369591
Alignment:
Q  86 tcattaatggtaaaagaacaaatctttgacatataatgaggaataaatcaaacaggattcacac-tttcataaccattaaaatgaaaagattacatatgc 184  Q
    ||||||| |||||||||||||||| ||||  |||| |||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||| |||    
T  9369692 tcattaaaggtaaaagaacaaatcattgatgtatattgaggaataaatcaaacatgattcacacttttcataaacattcaaatgaaaagattacatctgc 9369593  T
Q  185 aa 186  Q
    ||    
T  9369592 aa 9369591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 479
Target Start/End: Original strand, 35971976 - 35972026
Alignment:
Q  429 gtctcctaccgtaggagacctattgaagtctccaacagtaaacggcgccca 479  Q
    |||||||||||||||||||||||| |||||||| ||  |||||||||||||    
T  35971976 gtctcctaccgtaggagacctattcaagtctcctaccataaacggcgccca 35972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 402
Target Start/End: Complemental strand, 7217093 - 7217013
Alignment:
Q  322 aaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacacttgtcatttttgttata 402  Q
    |||||| ||| |||||||||||||||  ||| ||   ||||||||||||||||||  | ||||| || |||||||||||||    
T  7217093 aaaaaaatctagtgtggagggattatggtaagatcagtgttcttcgtcaatctaaccgcaacacatgccatttttgttata 7217013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 286 - 402
Target Start/End: Original strand, 18924343 - 18924459
Alignment:
Q  286 tggggttgttttggttgataggttgaagaaagtgtgaaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacac 385  Q
    |||| |||| |||||||  ||||||||||||||||||||||||| | |||||||||||||||| ||| ||  ||||||||| |||||  |||||| ||||    
T  18924343 tgggtttgtattggttgtgaggttgaagaaagtgtgaaaaaattatagtgtggagggattatagtaagatcaatgttcttcatcaattcaatggtgacac 18924442  T
Q  386 ttgtcatttttgttata 402  Q
      |||||||||||||||    
T  18924443 aagtcatttttgttata 18924459  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 29372189 - 29372276
Alignment:
Q  312 agaaagtgtgaaaaaa-ttcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacacttgtcatttttgt 398  Q
    |||||||||||||||| |||| |||||||||||||| | ||| ||  ||||||||| ||||||||||||| |||  ||||||||||||    
T  29372189 agaaagtgtgaaaaaaattctagtgtggagggattacagtaagatcaatgttcttcatcaatctaatggtgacaaatgtcatttttgt 29372276  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 7509640 - 7509727
Alignment:
Q  312 agaaagtgtgaaaaaa-ttcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacacttgtcatttttgt 398  Q
    |||||||||||||||| || | |||||||||||||| | ||| ||   |||||||| ||||||||||||| |||  ||||||||||||    
T  7509640 agaaagtgtgaaaaaaattatagtgtggagggattacagtaagatcagtgttcttcatcaatctaatggtgacaaatgtcatttttgt 7509727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 41196423 - 41196379
Alignment:
Q  358 atgttcttcgtcaatctaatggtaacacttgtcatttttgttata 402  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||    
T  41196423 atgttcttcgtcaatctaaccgcaacacatgtcatttttgttata 41196379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 21220463 - 21220566
Alignment:
Q  295 tttggttgataggttgaagaaagtgtgaaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacacttgtcattt 394  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||||||||| ||||| ||    ||||||| ||||||||||| |||||| ||| ||||    
T  21220463 tttggttgagaggttgaagaaagtgt-aaaaaattctagtgtggagggattacaataagatcagcgttcttcatcaatctaatgttaacacatgttattt 21220561  T
Q  395 ttgtt 399  Q
    |||||    
T  21220562 ttgtt 21220566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 40042748 - 40042865
Alignment:
Q  288 gggttgttttggttgataggttgaagaaagtgtg--aaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaacac 385  Q
    |||||||||||||||| |||||||||||||||||  |||||||| | ||||||| |||||||| ||| || | |||||| | |||||||  |||||||||    
T  40042748 gggttgttttggttgagaggttgaagaaagtgtgaaaaaaaattatagtgtggaaggattatagtaagatcggtgttctccatcaatctcttggtaacac 40042847  T
Q  386 ttgtcatttttgttatat 403  Q
       |||||||||||||||    
T  40042848 aattcatttttgttatat 40042865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 4108572 - 4108689
Alignment:
Q  284 gctggggttgttttggttgataggttgaagaaagtgtgaaaaaattcttgtgtggagggattataataatattgatgttcttcgtcaatctaatggtaac 383  Q
    |||||||||||||| |||   || ||||||||||||  |||| ||| | |||||||||||||||| ||| ||  ||||||||| ||||||||| ||| ||    
T  4108572 gctggggttgttttagtttggagattgaagaaagtga-aaaatattttagtgtggagggattatagtaagatcaatgttcttcatcaatctaacggtgac 4108670  T
Q  384 acttgtcatttttgttata 402  Q
    |  ||||||||||||||||    
T  4108671 aagtgtcatttttgttata 4108689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 461
Target Start/End: Original strand, 4108718 - 4108750
Alignment:
Q  429 gtctcctaccgtaggagacctattgaagtctcc 461  Q
    |||||||||||||||||||||||| ||||||||    
T  4108718 gtctcctaccgtaggagacctatttaagtctcc 4108750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 16264121 - 16264077
Alignment:
Q  359 tgttcttcgtcaatctaatggtaacacttgtcatttttgttatat 403  Q
    ||||||||||||||||||  | ||||| |||||||||||||||||    
T  16264121 tgttcttcgtcaatctaaccgcaacacatgtcatttttgttatat 16264077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 48911965 - 48912009
Alignment:
Q  358 atgttcttcgtcaatctaatggtaacacttgtcatttttgttata 402  Q
    ||||||||| ||||||||||||| |||  ||||||||||||||||    
T  48911965 atgttcttcatcaatctaatggtgacaaatgtcatttttgttata 48912009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 35707 - 35772
Alignment:
Q  338 gagggattataataatattgatgttcttcgtcaatctaatggtaacacttgtcatttttgttatat 403  Q
    ||||||||||  ||| ||| |||||||||||||||||||  | ||||| | |||||||||||||||    
T  35707 gagggattatggtaagattaatgttcttcgtcaatctaaccgcaacacatttcatttttgttatat 35772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 26420744 - 26420792
Alignment:
Q  429 gtctcctaccgtaggagacctattgaagtctccaacagtaaacggcgcc 477  Q
    |||||||||||| ||||||||||| |||||||| ||  |||||||||||    
T  26420744 gtctcctaccgtgggagacctattcaagtctcctaccataaacggcgcc 26420792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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