View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17326_low_9 (Length: 578)
Name: NF17326_low_9
Description: NF17326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17326_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Original strand, 5414227 - 5414780
Alignment:
| Q |
18 |
gttatgtagtttctaatgcggtatatgatgtccatacctaaaacatgcaaaatcacatatacatagtttctgatgcggtatatgatgtccatggctgaaa |
117 |
Q |
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| T |
5414227 |
gttatgtagtttctaatgcggtatatgatgtctatacctaaaacatgcaaaatcacatatacatagtttctgatgcggtatatgatgtccatgcctaaaa |
5414326 |
T |
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| Q |
118 |
catgcaaaatcacatacacatgcgacttacaataatccacaaaataatcaaattacatcatatagtgaagcagttcggtttatataatggaaaccaaaaa |
217 |
Q |
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| T |
5414327 |
catgcaaaatcacatacacatgcgacttacaataatccacaaaataatcaaattacatcatatagtgaagcagttcggtttatataatggaaaccaaaaa |
5414426 |
T |
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| Q |
218 |
caatcattaagtgcaactaagaatgttagttattcaataaaattgaggtgttacatgnnnnnnngagaaatgttaaacttaaaacttgtgagtgaaaata |
317 |
Q |
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| T |
5414427 |
caatcattaagtgcaactaagaatgttagttattcaataaaattgaggtgttacatgtttttttgagaaatgttaaacttaaaacttgtgagtgaaaata |
5414526 |
T |
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| Q |
318 |
tatttgagaggccaatcacagaagcatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattatcaaattcatgatata |
417 |
Q |
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| T |
5414527 |
tatttgagaggccaatcacagaagtatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattgtcaaattcatgatata |
5414626 |
T |
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| Q |
418 |
agggggg----ttaactatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataacta |
513 |
Q |
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| T |
5414627 |
aggggggttaattaactatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataacta |
5414726 |
T |
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| Q |
514 |
cttctcaaatagtttttctcatcaattgtttgtcaatagcagagccacattcat |
567 |
Q |
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| T |
5414727 |
cttctcaaatagtttttctcatcaattgtttgtcaatagcagagccacattcat |
5414780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 5398437 - 5398483
Alignment:
| Q |
300 |
aacttgtgagtgaaaatatatttgagaggccaatcacagaagcatca |
346 |
Q |
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| T |
5398437 |
aacttgtgagtgaaaatatatttgacagacccatcacaggagcatca |
5398483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 5406687 - 5406641
Alignment:
| Q |
300 |
aacttgtgagtgaaaatatatttgagaggccaatcacagaagcatca |
346 |
Q |
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| T |
5406687 |
aacttgtgagtgaaaatatatttgacagacccatcacaggagcatca |
5406641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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