View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17327_high_1_N (Length: 483)
Name: NF17327_high_1_N
Description: NF17327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17327_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 87 - 456
Target Start/End: Original strand, 32062504 - 32062873
Alignment:
| Q |
87 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttt |
186 |
Q |
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| T |
32062504 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttt |
32062603 |
T |
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| Q |
187 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnnnnnngattaatgaagcaggagaaagcac |
286 |
Q |
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| T |
32062604 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcac |
32062703 |
T |
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| Q |
287 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacctcgagcagaaacaacgtcctccactaccaaaatcgcgaggaaa |
386 |
Q |
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| T |
32062704 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacctcgagcagaaacaacgtcctccactaccaaaatcgcgaggaaa |
32062803 |
T |
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| Q |
387 |
gtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatgatg |
456 |
Q |
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| T |
32062804 |
gtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatgatg |
32062873 |
T |
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