View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17327_high_2 (Length: 388)

Name: NF17327_high_2
Description: NF17327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17327_high_2
NF17327_high_2
[»] chr6 (1 HSPs)
chr6 (1-359)||(5951626-5951984)
[»] chr5 (2 HSPs)
chr5 (155-354)||(31952004-31952203)
chr5 (1-63)||(31951763-31951825)
[»] chr3 (3 HSPs)
chr3 (151-309)||(28188292-28188450)
chr3 (151-350)||(18077779-18077978)
chr3 (214-309)||(28153709-28153806)
[»] chr4 (1 HSPs)
chr4 (159-297)||(9907865-9908003)
[»] chr7 (4 HSPs)
chr7 (1-55)||(27092402-27092456)
chr7 (1-55)||(27185845-27185899)
chr7 (238-293)||(27092762-27092817)
chr7 (238-293)||(27185484-27185539)
[»] scaffold1163 (1 HSPs)
scaffold1163 (1-36)||(2255-2290)
[»] chr2 (1 HSPs)
chr2 (220-261)||(22396983-22397024)


Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 5951626 - 5951984
Alignment:
Q  1 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacgcagaattattagagcggctcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5951626 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacacagaattattagagcggctcac 5951725  T
Q  101 tacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5951726 tacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtaccaataacactgtgtgccggctgcgaaccacgaagaatcg 5951825  T
Q  201 ctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctc 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951826 ctgctagacccaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctc 5951925  T
Q  301 atgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951926 atgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgt 5951984  T

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Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 155 - 354
Target Start/End: Original strand, 31952004 - 31952203
Alignment:
Q  155 taagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaata 254  Q
    ||||||||||||||||| || || |  || |||||  | ||||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  31952004 taagtacctataacactatgagctgattgagaaccttggagaattgcagctagtccaaggtcaccaattttcacttgtccaagatgaccattgacaaata 31952103  T
Q  255 tgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttg 354  Q
    ||||||| || || ||||| ||||| ||||| || ||||||||  |||||| |||||| ||||| ||||| ||||||||  |||||||||||||||||||    
T  31952104 tgttatcacattttaggtccctatggattacaggtggatcatggccatgtaaataaactagaccttgtaaaatttggcgcgcccaactctttattgcttg 31952203  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31951763 - 31951825
Alignment:
Q  1 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaa 63  Q
    ||||||||||||||||| |||||||  || ||||||||||||||||| ||||||  |||||||    
T  31951763 agttcattgtattcttcctcgtacatttccggtgccatgaactccggtgttcctaacacaaaa 31951825  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 151 - 309
Target Start/End: Complemental strand, 28188450 - 28188292
Alignment:
Q  151 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 250  Q
    ||||||||||| |||||||||||| |  || |||||| ||||||||||||||| |||||| | ||||||||||||   |||||||||||| |||||||||    
T  28188450 aaaataagtacttataacactgtgcgttggttgcgaaacacgaagaatcgctgttagacccaagtcaccaatttttgtttgtccaagatgtccattgaca 28188351  T
Q  251 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 309  Q
    | ||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||    
T  28188350 agtatgttatcacacttgaggtccctatgaattactggatgatcatgttcatgtagata 28188292  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 350
Target Start/End: Original strand, 18077779 - 18077978
Alignment:
Q  151 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 250  Q
    |||| |||||||||||||||||||||| ||||  |||||| | |||||| ||||||||| || || | || |||||||||||| |||| | |||||||||    
T  18077779 aaaacaagtacctataacactgtgtgctggctatgaaccatggagaatccctgctagacttaagtaaacagttttcacttgtcaaagacgtccattgaca 18077878  T
Q  251 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattg 350  Q
    ||||   |||| |  |||||||  |||||||||||| | |||||||| |||||||||||||||||||| | ||| ||||| ||  |||||||||||||||    
T  18077879 aatactatatcacgtttgaggttcctatgaattacccgtggatcatgttcatgtagataaacaagaccctctaacatttgacgtgcccaactctttattg 18077978  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 28153806 - 28153709
Alignment:
Q  214 gtcaccaattttcacttgtccaagatggccattgacaaatatgt--tatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 309  Q
    ||||||||||||  ||||||||||||| |||||||||| |||||  |||| ||||||||||| |||||| |||| ||| ||||||| |||||||||||    
T  28153806 gtcaccaatttttgcttgtccaagatgtccattgacaagtatgttatatcacacttgaggtccctatgagttactggatgatcatgttcatgtagata 28153709  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 297
Target Start/End: Complemental strand, 9908003 - 9907865
Alignment:
Q  159 tacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgtt 258  Q
    ||||||| |||||||||||  | || || ||||||||||| ||||| || ||||  |||||||| || || |  || | ||| ||||||||||| |||||    
T  9908003 tacctatgacactgtgtgcatgttgggagccacgaagaattgctgcaagccctaaatcaccaatcttgaccttacccatatgaccattgacaaagatgtt 9907904  T
Q  259 atcgcacttgaggtctctatgaattaccggaggatcatg 297  Q
    ||| ||||| ||||||||||| || || |||||||||||    
T  9907903 atcacactttaggtctctatgtatcacaggaggatcatg 9907865  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27092402 - 27092456
Alignment:
Q  1 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 55  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27092402 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27092456  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27185899 - 27185845
Alignment:
Q  1 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 55  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27185899 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27185845  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 27092762 - 27092817
Alignment:
Q  238 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 293  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27092762 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27092817  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 27185539 - 27185484
Alignment:
Q  238 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 293  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27185539 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27185484  T

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Target: scaffold1163 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2255 - 2290
Alignment:
Q  1 agttcattgtattcttcttcgtacaactctggtgcc 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  2255 agttcattgtattcttcttcgtacaattctggtgcc 2290  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 22396983 - 22397024
Alignment:
Q  220 aattttcacttgtccaagatggccattgacaaatatgttatc 261  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  22396983 aattttcacgtgtccaagatgtccattgacaaatgtgttatc 22397024  T

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