View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17327_high_3 (Length: 374)
Name: NF17327_high_3
Description: NF17327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17327_high_3 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 11780115 - 11780465
Alignment:
| Q |
25 |
acatcatcttgctcaacaattgatgaatgtggtacatgcccatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacat |
124 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
11780115 |
acatcatcgtgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagctcctgtgggcgcgaatgattatgttccacat |
11780214 |
T |
|
| Q |
125 |
catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
11780215 |
catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgcttcactctctcagaatgcatttcatc |
11780314 |
T |
|
| Q |
225 |
atgcaa-ccgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgt |
323 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |
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|
| T |
11780315 |
atgcaatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaagatgt |
11780414 |
T |
|
| Q |
324 |
tgacgacaatgatgtcctaggcatagggaccgtcatatgagaagtaacaac |
374 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11780415 |
tgacgacaatgatgtcctgggcatagggaccgtcatatgagaagtaacaac |
11780465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 10424593 - 10424765
Alignment:
| Q |
46 |
gatgaatgtggtacatgcccatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
145 |
Q |
| |
|
||||||||||||||| || | | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || | |
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|
| T |
10424593 |
gatgaatgtggtacacgctcgtaggaacccttaggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagaga |
10424692 |
T |
|
| Q |
146 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
218 |
Q |
| |
|
|||| || || || |||||||||| |||||||||||||| ||||| | || |||||||||||||||||||| |
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|
| T |
10424693 |
catcatccaccacggggttctccaatacctcccgcgatgtcagatgcaattgttccactctctcagaatgcac |
10424765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 1624838 - 1625008
Alignment:
| Q |
46 |
gatgaatgtggtacatgcccatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
145 |
Q |
| |
|
||||||||||||||| || | |||| |||||| |||||||| ||||| ||| | |||| |||| ||| |||||||||||||| | ||||| ||| | |
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|
| T |
1624838 |
gatgaatgtggtacacgctcgtgggaacccttgggactctcgaccagctcccgcgggctcgaactattgtgttccacatcatcataaagcgtaacagtga |
1624937 |
T |
|
| Q |
146 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgc |
216 |
Q |
| |
|
|||| || || ||||| ||||| |||||||||||||| ||||| |||| || ||||||||| ||||| |
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|
| T |
1624938 |
catcatccaccgtggggttccccaacacctcccgcgatgtcagatgcaactgttctactctctcaaaatgc |
1625008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 30731537 - 30731478
Alignment:
| Q |
70 |
gcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatcc |
129 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| | ||||| |||||||||| ||||| |
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|
| T |
30731537 |
gcacccttgggactctccaccagctcctgtgggctcacatgatcatgttccacaccatcc |
30731478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 34 - 374
Target Start/End: Original strand, 17158540 - 17158884
Alignment:
| Q |
34 |
tgctcaacaattgatgaatgtggtacatgcccatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgaga |
133 |
Q |
| |
|
|||| |||||||||||||||| |||||||| ||||| | ||||| ||||||||||||| | || ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
17158540 |
tgcttaacaattgatgaatgtagtacatgctcatggtcccccttgggactctccaccaactactaggggtgcgaatgattatgctccacatcatccgaga |
17158639 |
T |
|
| Q |
134 |
gcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctcc-actctctcagaatgcacttcatcatgc---a |
229 |
Q |
| |
|
| || | ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| | |
|
|
| T |
17158640 |
gtgtcgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcggatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaa |
17158739 |
T |
|
| Q |
230 |
accgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacga |
329 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
17158740 |
actaggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacga |
17158839 |
T |
|
| Q |
330 |
caatgatgtcctaggcatagggaccgtcatatgagaagtaacaac |
374 |
Q |
| |
|
|||||| ||| | ||||||||||| |||| |||||||||||||| |
|
|
| T |
17158840 |
caatgacgtcttgggcatagggactgtcaactgagaagtaacaac |
17158884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 28 - 369
Target Start/End: Complemental strand, 14977814 - 14977470
Alignment:
| Q |
28 |
tcatcttgctcaacaattgatgaatgtggtacatgcccatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcat |
127 |
Q |
| |
|
||||| |||| |||||| ||||||||||| |||||| |||||| |||||| |||||||||||||| ||| | ||| ||||||||||||||||||||||| |
|
|
| T |
14977814 |
tcatcatgctaaacaatggatgaatgtggaacatgctcatgggaacccttgggactctccaccagctcccgcggggtcgaatgattatgttccacatcat |
14977715 |
T |
|
| Q |
128 |
ccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat- |
226 |
Q |
| |
|
|| ||||| | ||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
14977714 |
aagatagcgtagcagtaacatcgtcaaccgttgggatctgcacctcctcccgcgatgtcggatgcgactgctccactctctcggaatgcacgtcatcgtg |
14977615 |
T |
|
| Q |
227 |
-gcaac-cgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgtt |
324 |
Q |
| |
|
||||| |||| |||| |||| |||||| |||||| | ||| || |||||||||||| | ||||||| ||| || | ||| ||||| ||||||||| |
|
|
| T |
14977614 |
cgcaactggggacacaaactcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgtt |
14977515 |
T |
|
| Q |
325 |
gacgacaatgatgtcctaggcatagggaccgtcatatgagaagta |
369 |
Q |
| |
|
|| ||||| || ||||| |||| ||||||| |||| ||||||||| |
|
|
| T |
14977514 |
gatgacaaagacgtcctgggcacagggaccatcatctgagaagta |
14977470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 332
Target Start/End: Original strand, 11776308 - 11776482
Alignment:
| Q |
161 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatg--caac-cgggaaacaatttcaaacactggcgt |
257 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| || |||| ||||||||| || |||||||| || |
|
|
| T |
11776308 |
ggttctccaactcctcccgcgatgactgatgcaactgctccactctctcagaatgcacatcatcgtgcacaacaggggaaacaacctctaacactggtgt |
11776407 |
T |
|
| Q |
258 |
agctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
332 |
Q |
| |
|
| | || ||| ||||||| |||||| ||||||||| | ||||| | ||||||||||||||| |||||||||| |
|
|
| T |
11776408 |
aacatgtggcaactcctcatgagaaattttgtcaaacgcattatgtaatggaaagctgaaagagtttgacgacaa |
11776482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 9352421 - 9352477
Alignment:
| Q |
161 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgca |
217 |
Q |
| |
|
||||||||||| |||| ||||||||| || || |||| ||||||||||||||||||| |
|
|
| T |
9352421 |
ggttctccaacacctctcgcgatgtcagacgcaactgttccactctctcagaatgca |
9352477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 24353638 - 24353686
Alignment:
| Q |
161 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| | ||||||| |
|
|
| T |
24353638 |
ggttctccaactcctcccgcgatgtctgatgcaactgcttcgctctctc |
24353686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 28 - 349
Target Start/End: Complemental strand, 12102070 - 12101751
Alignment:
| Q |
28 |
tcatcttgctcaacaattgatgaatgtggtacatgcccatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattat----gttccaca |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| ||| | |||||||||||||||| |||||||| |
|
|
| T |
12102070 |
tcatcgtgctcaacaattgatgaatgtggtacatgctcataggcacccttgggactctccaccagctcccgggggcgcgaatgattatatatgttccaca |
12101971 |
T |
|
| Q |
124 |
tcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcat |
223 |
Q |
| |
|
| | | | ||||||||||||| | | ||||||||||||||||||||||||||| ||| | |||||| ||||||||| |||||| |||| |
|
|
| T |
12101970 |
t---------gtatcgtagtaacatcgtcagccatggggttctccaactcctcccgcgatgtcgaatgtgtttgctccgctctctcaggatgcacgtcat |
12101880 |
T |
|
| Q |
224 |
catgcaacc---gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaaga |
320 |
Q |
| |
|
| |||| |||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
12101879 |
cgtgcacaattggggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaaga |
12101780 |
T |
|
| Q |
321 |
tgttgacgacaatgatgtcctaggcatag |
349 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |
|
|
| T |
12101779 |
tgttgacgacaatgacgtcataggcatag |
12101751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 332
Target Start/End: Original strand, 5781902 - 5782191
Alignment:
| Q |
46 |
gatgaatgtggtacatgcccatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
145 |
Q |
| |
|
|||||| ||| |||| || |||||| |||||| |||||||||||||| ||| | ||| ||||||||| |||||||||||||| || || || ||||| |
|
|
| T |
5781902 |
gatgaacgtgatacacgctcatgggaacccttgggactctccaccagctcccgcgggatcgaatgattgtgttccacatcatcagaaagtgtaacagtaa |
5782001 |
T |
|
| Q |
146 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaat |
242 |
Q |
| |
|
|||| || || |||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| ||||| | ||||| ||||||||| |
|
|
| T |
5782002 |
catcatccaccgtgtggttctccaactccttccgcgatgtctgatgcaactgctcctctctctcagaatgcacgtcatcgtgcgcaacaagggaaacaac |
5782101 |
T |
|
| Q |
243 |
ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
332 |
Q |
| |
|
|| |||||||||||||| | ||||||||||| |||||| | | ||||| || || | ||||||||||||||| |||||||||| |
|
|
| T |
5782102 |
ctctaacactggcgtagcacatggcagctcctcaggagaaattctattgaacacattgtgtaatggaaagctgaaagagtttgacgacaa |
5782191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 332
Target Start/End: Original strand, 19069420 - 19069709
Alignment:
| Q |
46 |
gatgaatgtggtacatgcccatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
145 |
Q |
| |
|
|||||||||| || | || ||||| |||||| |||||||||||||| ||||| ||| ||||||||| ||||||||||||| || || || ||||| |
|
|
| T |
19069420 |
gatgaatgtgatatacgctcatggaaacccttgggactctccaccagctcctgcgggatcgaatgattgtgttccacatcattagaaagggtaacagtaa |
19069519 |
T |
|
| Q |
146 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaat |
242 |
Q |
| |
|
|||| || || |||||||||||||||| ||||||||| ||||| || ||||| |||||||||||||||| ||||| | ||||| |||||| || |
|
|
| T |
19069520 |
catcttccaccgtggggttctccaactcctctcgcgatgtctgatgcaaccgctcctctctctcagaatgcacgtcatcgtgcgcaacaggggaaataac |
19069619 |
T |
|
| Q |
243 |
ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
332 |
Q |
| |
|
|| |||||||||||||| || ||||||||| | |||||| ||||||||| | || || | ||||||||||||||| |||||||||| |
|
|
| T |
19069620 |
ctctaacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa |
19069709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 11724758 - 11724701
Alignment:
| Q |
161 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
218 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | ||||| |||||| ||||||||| |
|
|
| T |
11724758 |
ggttctccaacacctcccgcgatgtcagatgcaattgctctgctctcttagaatgcac |
11724701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 17764060 - 17763963
Alignment:
| Q |
58 |
acatgcccatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaac |
155 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||| ||| | || |||||||||||||||||||||| || ||||| | ||||||||| ||||| |
|
|
| T |
17764060 |
acatgctcatgggaacccttgagactctccaccagctcccgccagcttaaatgattatgttccacatcatcagaaagcgtagcagtaacatcatcaac |
17763963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 16311778 - 16311632
Alignment:
| Q |
72 |
acccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaac |
171 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| || || || ||||||||||| |
|
|
| T |
16311778 |
acccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaac |
16311679 |
T |
|
| Q |
172 |
tcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
218 |
Q |
| |
|
|||||||||||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
16311678 |
acctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac |
16311632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 18488562 - 18488416
Alignment:
| Q |
72 |
acccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaac |
171 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| || || || ||||||||||| |
|
|
| T |
18488562 |
acccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaac |
18488463 |
T |
|
| Q |
172 |
tcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
218 |
Q |
| |
|
|||||||||||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
18488462 |
acctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac |
18488416 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 18492772 - 18492626
Alignment:
| Q |
72 |
acccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaac |
171 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| || || || ||||||||||| |
|
|
| T |
18492772 |
acccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaac |
18492673 |
T |
|
| Q |
172 |
tcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
218 |
Q |
| |
|
|||||||||||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
18492672 |
acctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac |
18492626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 19829018 - 19829181
Alignment:
| Q |
66 |
atgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttc |
165 |
Q |
| |
|
||||| |||||| |||||||||||||| ||| | ||| ||||||||| |||||||||||||| || || || ||||||||||| ||| ||||| |
|
|
| T |
19829018 |
atgggaacccttgggactctccaccagctcccgcgggttcgaatgattgtgttccacatcatcagaaagtgtaacagtaacatcgttcactgtggggttc |
19829117 |
T |
|
| Q |
166 |
tccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatgca |
229 |
Q |
| |
|
||||||||| || | |||||| | ||| || ||||| |||||||||||||||| ||||| |||| |
|
|
| T |
19829118 |
tccaactccccctgtgatgtctggtgcaaccgctcctctctctcagaatgcacgtcatcgtgca |
19829181 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 16314161 - 16314023
Alignment:
| Q |
80 |
gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg |
179 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| || || || ||||||||||| ||||||| |
|
|
| T |
16314161 |
gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg |
16314062 |
T |
|
| Q |
180 |
cgatgtcggatgcgactgctccactctctcagaatgcac |
218 |
Q |
| |
|
|||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
16314061 |
tgatgtcagatgcaattgttccactttctcaaaatgcac |
16314023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 18495155 - 18495017
Alignment:
| Q |
80 |
gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg |
179 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| || || || ||||||||||| ||||||| |
|
|
| T |
18495155 |
gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg |
18495056 |
T |
|
| Q |
180 |
cgatgtcggatgcgactgctccactctctcagaatgcac |
218 |
Q |
| |
|
|||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
18495055 |
tgatgtcagatgcaattgttccactttctcaaaatgcac |
18495017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 17459569 - 17459431
Alignment:
| Q |
80 |
gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg |
179 |
Q |
| |
|
|||||||||||| ||| | |||| ||||||||| ||||||||||||| || ||||| ||| |||||||| |||| |||||||||||| ||||| |
|
|
| T |
17459569 |
gactctccaccatctcccgcgggctcgaatgattgtgttccacatcattagaaagcgtaacagtgacatcgtccactatggggttctccaacttttcccg |
17459470 |
T |
|
| Q |
180 |
cgatgtcggatgcgactgctccactctctcagaatgcac |
218 |
Q |
| |
|
||||||||||||| | ||||| ||||||| |||||||| |
|
|
| T |
17459469 |
cgatgtcggatgcaattgctctgctctctcggaatgcac |
17459431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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