View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17327_high_5 (Length: 353)
Name: NF17327_high_5
Description: NF17327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17327_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 28673194 - 28673525
Alignment:
| Q |
12 |
atgacatgtacgatgtatacgatctttgatacaattttagacattatgcactaagagaaatgataaccagataaattatatcatgtgaaagttcacttat |
111 |
Q |
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| T |
28673194 |
atgacatgtacgatgtatacgatctttgatacgattttagacattatgcactaagagaaatgataaccagataaattatatcatgtgaaagttcacttat |
28673293 |
T |
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| Q |
112 |
gaaatcaggtgtagnnnnnnnagaaatgtgaaagtgtggaaacatcattccctcttatgatgtttgtattttgcatcaaatcaaatattcatcacatttg |
211 |
Q |
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| T |
28673294 |
gatatcaggtgtagtttttttagaaatgtgaaagtgtggaaaaatcattccctcttatgatgttggtattttgcatcaaatcaaatattcatcacatttg |
28673393 |
T |
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| Q |
212 |
actataatgtcgtcttttctgcttatctagataaaattatttaagtttatttgcaatttcaatcaccttatttacacttgctcacggaataaatcctctt |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28673394 |
actacaatgtcgtcttttctgcttatctagataaaattatttaagtttatttgcaatttcaatcaccttatttacacttgctcacggaataaatcctctt |
28673493 |
T |
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| Q |
312 |
ttttaaaatttggtttctttgtccctcaatta |
343 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28673494 |
ttttaaaatttggtttctttgtccctcaatta |
28673525 |
T |
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