View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17327_low_1 (Length: 525)
Name: NF17327_low_1
Description: NF17327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17327_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 167 - 499
Target Start/End: Original strand, 28673193 - 28673525
Alignment:
| Q |
167 |
tatgacatgtacgatgtatacgctctttgttacacttttagacattatgcactatgcgaaatgataaccagataaattatatcatgtgaaagttcactta |
266 |
Q |
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| T |
28673193 |
tatgacatgtacgatgtatacgatctttgatacgattttagacattatgcactaagagaaatgataaccagataaattatatcatgtgaaagttcactta |
28673292 |
T |
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| Q |
267 |
tgaaatcaggtgtagnnnnnnnagaaatgtgaaagtgtggaaaaatcattccctcttatgatgtttgtattttgcatcaaatcaaatattcatcacattt |
366 |
Q |
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| T |
28673293 |
tgatatcaggtgtagtttttttagaaatgtgaaagtgtggaaaaatcattccctcttatgatgttggtattttgcatcaaatcaaatattcatcacattt |
28673392 |
T |
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| Q |
367 |
gactataatgtcgtcttttctgcttatctagataaaattatttaagtttatttgcaatttcaatcaccttatttacacttgctcacggaataaatcctct |
466 |
Q |
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| T |
28673393 |
gactacaatgtcgtcttttctgcttatctagataaaattatttaagtttatttgcaatttcaatcaccttatttacacttgctcacggaataaatcctct |
28673492 |
T |
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| Q |
467 |
tttttaaaatttggtttctttgtccctcaatta |
499 |
Q |
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| T |
28673493 |
tttttaaaatttggtttctttgtccctcaatta |
28673525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 28672709 - 28672577
Alignment:
| Q |
14 |
gtttatgcattagacactatcatgggcgaggttggattacaaggtcgaatctggtgggcatcctgggccgcacggttgatgctcatttaccgttgctcgc |
113 |
Q |
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| T |
28672709 |
gtttatgcattagacactatcatgggcgaggttggattacagggtcgaatctggtgggcatcctgggccgcacgggtggtgctcatttaccattgctcgc |
28672610 |
T |
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| Q |
114 |
agagccggccgagaaggattattggtatatggt |
146 |
Q |
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| T |
28672609 |
agagccggctgagaaggattattggtatatggt |
28672577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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