View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17327_low_2 (Length: 428)
Name: NF17327_low_2
Description: NF17327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17327_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 6709102 - 6709463
Alignment:
| Q |
17 |
agaatataactaatttaagtgggagggcatgatgacctacctgtcaagaatatgtaacatagaaatatagaaagacaaataggtatactataataaaagg |
116 |
Q |
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| T |
6709102 |
agaatataactaatttaagtgggagggcatgatgacctacctgtcaagaatatgtaacatagaaatatagaaagacaaataggtatactataataaaagg |
6709201 |
T |
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| Q |
117 |
acattgtcattaaattgattataagaggcaattataaagaaataataaataaaatattatatgacnnnnnnnatttggcatgcatgatgatgatggtgtc |
216 |
Q |
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| T |
6709202 |
acattgtcattaaattgattataagaggcaattataaagaaataataaatagaatattatatgactttttttatttggcatgcatgatgatgatggtgtc |
6709301 |
T |
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| Q |
217 |
tcacacacgacccaagaatcgaaacactgcgacgtgggcttatattgtaagacattcttgcttaagccatgtgcttcccaccctccttgcatctatttgt |
316 |
Q |
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| T |
6709302 |
tcacacacgacccaagaatcgaaacactgcgacgtgggcttatattgtaagacattcttgcttaagccatgtgcttcccaccctccttgcatctatttgt |
6709401 |
T |
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| Q |
317 |
acgg--tacctctttgtgttttgtttatgggaagtgatcttgaccttgatcagaagagttgg |
376 |
Q |
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| T |
6709402 |
acggtatacctctttgtgttatgtttatgggaagtgatcttgaccttaatcagaagagttgg |
6709463 |
T |
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