View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17327_low_3 (Length: 302)
Name: NF17327_low_3
Description: NF17327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17327_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 73 - 287
Target Start/End: Original strand, 40077137 - 40077351
Alignment:
| Q |
73 |
agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt |
172 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40077137 |
agatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt |
40077236 |
T |
|
| Q |
173 |
tctctttgcttcatttcttctctcacattttaaccactttctttcttattccacttgctttcagcatttcctatgttagtgtgtgaaagaaaaagtttgc |
272 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
40077237 |
tctctttgcttcatttcttctctcacatttttaccactttctttcttattctacttgctttcagcatttcctatgttaatatgtgaaagaaaaagtttga |
40077336 |
T |
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| Q |
273 |
attgcagatagaatt |
287 |
Q |
| |
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||||||||||||||| |
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| T |
40077337 |
attgcagatagaatt |
40077351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 40059109 - 40059252
Alignment:
| Q |
73 |
agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt |
172 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059109 |
agatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt |
40059208 |
T |
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| Q |
173 |
tctctttgcttcatttcttctctcacattttaaccactttcttt |
216 |
Q |
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| T |
40059209 |
tctctttgcttcatttcttctctcacattcttaccattttcttt |
40059252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 40085047 - 40085190
Alignment:
| Q |
73 |
agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt |
172 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40085047 |
agatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt |
40085146 |
T |
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| Q |
173 |
tctctttgcttcatttcttctctcacattttaaccactttcttt |
216 |
Q |
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||||||||||||||||||||||| ||||| | |||| ||||||| |
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| T |
40085147 |
tctctttgcttcatttcttctcttacattcttaccattttcttt |
40085190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 22016297 - 22016195
Alignment:
| Q |
73 |
agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt |
172 |
Q |
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|||||||||| ||||||||||| ||||| |||||||| ||| | ||||| ||||| || ||||||||||||||| | || || || ||| ||||||||| |
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| T |
22016297 |
agatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgagccggttcgaggccaggt |
22016198 |
T |
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| Q |
173 |
tct |
175 |
Q |
| |
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||| |
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| T |
22016197 |
tct |
22016195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 44352819 - 44352747
Alignment:
| Q |
73 |
agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaa |
145 |
Q |
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|||||||||| | |||||||||| | | ||||| || ||| ||||||||||||||||||||||||||||||| |
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| T |
44352819 |
agatgtggcctgctcttattcaaacagcaaaagaaggtggaatagatgtcattgaaacctatgttttctggaa |
44352747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 53322448 - 53322548
Alignment:
| Q |
73 |
agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggt |
172 |
Q |
| |
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||||||||||| |||| |||||||||| || |||||||||| | ||||||| ||| ||||| |||||||||||||||| |||| |||||||| |||| |
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| T |
53322448 |
agatgtggccaaacctcattcaaaaatatatagatggaggattttatgtcatccaaa-ctatg-tttctggaacttacataaaccagttaaaggttaggt |
53322545 |
T |
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| Q |
173 |
tct |
175 |
Q |
| |
|
||| |
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| T |
53322546 |
tct |
53322548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 5450729 - 5450814
Alignment:
| Q |
73 |
agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacct |
158 |
Q |
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||||||||||||| ||||| || || ||||||| |||||| | ||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
5450729 |
agatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaacct |
5450814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 35052970 - 35052914
Alignment:
| Q |
73 |
agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaa |
129 |
Q |
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||||||||||| ||||||||||||||| || |||||||||||| ||||||| |||| |
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| T |
35052970 |
agatgtggccaaaccttattcaaaaatttatagatggaggactttatgtcatcgaaa |
35052914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 9642493 - 9642550
Alignment:
| Q |
73 |
agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaac |
130 |
Q |
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|||||||||| |||||||||||||| | |||||||| || ||||||| ||||||||| |
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| T |
9642493 |
agatgtggcctgaccttattcaaaaggccaaagatggtggcctagatgccattgaaac |
9642550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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