View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17328_low_1 (Length: 608)
Name: NF17328_low_1
Description: NF17328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17328_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 13 - 595
Target Start/End: Original strand, 7033704 - 7034290
Alignment:
| Q |
13 |
aatatcatttgtggcagcttgtattgttatgaaataggcctatgtgggttttgttaacttttttacaatcctttgctccnnnnnnnngaaaaca----at |
108 |
Q |
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| T |
7033704 |
aatatcatttgtggcagcttgtattgttatgaagtaggcctatgtgggttttgttaacttttttacaatcctttgctccaaaaaaaataaaaaataaaat |
7033803 |
T |
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| Q |
109 |
aacttttttacaatccttattgttttgtttcagagcttataaaagttctagagatgcatgcattcagtatacataaagcttttttgaaaagaagacaacg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |
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| T |
7033804 |
aacttttttacaatccttattgttttgtttcagagcttataaaagttctagagatgcatgcattcagtataaataaagcttttttgaaagggagacaacg |
7033903 |
T |
|
| Q |
209 |
aatatgtaaatcattcattcatgcttttataattatttggtttaatcggataaaagtattcttaatatgacatttagtacgcaataaacaaccctttgtt |
308 |
Q |
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| T |
7033904 |
aatatgtaaatcattcattcatgcttatataattatttggtttaatcggataaaggtattcttaatatgacatttagtacgcaataaacaaccctttgtt |
7034003 |
T |
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| Q |
309 |
ttcagcattatccaaatccatgttcaatggaaatttgctctttagcaccaacgcaattgctcttttatgcaagtgtcgttggttaagcggcacttaaatg |
408 |
Q |
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| T |
7034004 |
ttcagcattatccaaatccatgttcaatggaaatttgctctttagcaccaacgcaattgctcttttatgcaagtgtcattggttaagcggcacttaaatg |
7034103 |
T |
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| Q |
409 |
ttgttcacttaaccagcagcagttaagtgcgctagcttcgacactttttagattggttcaatcacttttttaaatatgtttaaccaatttaaaaaatagc |
508 |
Q |
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| T |
7034104 |
ttgttcacttaaccagcagcagttaagtgcgctagcttcgacactttttagattggttcaatcacttttttaaatatgtctaacaaatttaaaaaatagc |
7034203 |
T |
|
| Q |
509 |
ctgaaagtcaactgtcgttcgaataaatgggtgatttcccggtgcaattttagagacctgaagagcaatattcatcttcaatagtga |
595 |
Q |
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| T |
7034204 |
ccgaaagtcaactgtcgatcgaaaaaatgggtgattccctggtgcaattttagaggcctgaagagcgatcttcgtcttcaatagtga |
7034290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 7039488 - 7039549
Alignment:
| Q |
121 |
atccttattgttttgtttcagagcttataaaagttctagagatgcatgcattcagtatacata |
183 |
Q |
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| T |
7039488 |
atccttattgttttgtttcagagattacaaaatttgtagagaggcatg-attcagtatacata |
7039549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 7026334 - 7026398
Alignment:
| Q |
21 |
ttgtggcagcttgtattgttatgaaataggcctatgtgggttttgttaacttttttacaatcctt |
85 |
Q |
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| T |
7026334 |
ttgtggcagcttgtattgctatgaagtaagtttatgtggcttttgtaaactttttttccatcctt |
7026398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 23810937 - 23810992
Alignment:
| Q |
343 |
ttgctctttagcaccaacgcaattgctcttttatgcaagtgtcgttggttaagcgg |
398 |
Q |
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| T |
23810937 |
ttgctctttagcaccaacacaattgctctttaatgcaagtgtcattagttgagcgg |
23810992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 505
Target Start/End: Original strand, 55369357 - 55369411
Alignment:
| Q |
450 |
cactttttagattggttcaatcacttttttaaatatgtttaaccaatttaaaaaat |
505 |
Q |
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| T |
55369357 |
cactttttagattggatgaatcacttttt-aaatcggtttaaccaatttaaaaaat |
55369411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 503
Target Start/End: Complemental strand, 34673873 - 34673824
Alignment:
| Q |
453 |
tttttagattggttcaatcacttttttaaatatgtttaaccaatttaaaaa |
503 |
Q |
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| T |
34673873 |
tttttagattggttcaatcact-ttttaaatcggtttaaccaatttaaaaa |
34673824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 346 - 414
Target Start/End: Original strand, 28134927 - 28134995
Alignment:
| Q |
346 |
ctctttagcaccaacgcaattgctcttttatgcaagtgtcgttggttaagcggcacttaaatgttgttc |
414 |
Q |
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| T |
28134927 |
ctctttagcactatcacaatcactcttttatgcaagtgtcattggttgagcaacacttaagtgttgttc |
28134995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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