View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_high_1 (Length: 563)
Name: NF17329_high_1
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 12 - 545
Target Start/End: Original strand, 1683109 - 1683640
Alignment:
| Q |
12 |
atgaagcaatattgttgattatactgatatggctagttggaatgtataaaaggggtgcacatagtaatnnnnnnntttttagaagaaaggcccaaaggaa |
111 |
Q |
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| T |
1683109 |
atgaagcaatattgttgattatactgatatggctagttggaatgtataaaaggggtgcacatagtaataaaaaaaaaa--agaagaaaggcccaaaggaa |
1683206 |
T |
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| Q |
112 |
aatggtgtacactgctgaactgtactgcgggtaatgaatgaatacgcattgtttgttaccgccgcaccgtcgtagattgattgattcaaacctcatcgga |
211 |
Q |
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| T |
1683207 |
aatggtgtacactgctgaactgtactgcgggtaatgaatgaatacgcattgtttgttaccgccgcaccgtcgtagattgattgattcaaacctcatcgga |
1683306 |
T |
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| Q |
212 |
tttggtgggatcgatcggaaacatagtggtggagaaagcaggtaccatgaaccctagttagaattggtacattcatatttacgaatctaatgttatcatg |
311 |
Q |
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| T |
1683307 |
tttggtgggatcgatcggaaacatagtggtggagaaagcaggtactatgaatcctagttagaattggtacattcatatttacgaatctaatgttatcatg |
1683406 |
T |
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| Q |
312 |
aaatcacattgttattgttattctatacagatggtgtcaagttctatatgattgaatgaatggcaacgagtgcaattttattcgctgcttgcggagaacc |
411 |
Q |
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| T |
1683407 |
aaatcacattgttattgttattctatacagatggtgtcaagttctatatgattgaatgaatggcaacgagtgcaattttatttgctgcttgcggagaacc |
1683506 |
T |
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| Q |
412 |
gatttggttacaaacgatgacaacgacacatatcgcatttctaagatttattaatcgcactattcaatctattaatcaacgctttttctcttctcaagac |
511 |
Q |
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| T |
1683507 |
gaattggttacaaacgatgacaacgacacatatcgcatttctaagatttattaatcgcactattcaatctattaatcaacgctttttctcctctcaagac |
1683606 |
T |
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| Q |
512 |
caagacatcaaacatgtcaggtacgtgctacttt |
545 |
Q |
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| T |
1683607 |
caagacatcaaacatgtcaggtatgtgctacttt |
1683640 |
T |
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