View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_high_11 (Length: 270)
Name: NF17329_high_11
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_high_11 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 34312786 - 34313031
Alignment:
| Q |
18 |
ggtattgatatgtgattacgttcaatgatgctttgacggattgtgttaagcatttggcataatagagatttcaaattcattcagtttcgacagaataaat |
117 |
Q |
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| T |
34312786 |
ggtactgatatgtgattacgttcaatgatggtttgacggattgtgttaagcatttggcataatagagatttcaaaatcattcagtttcgatagaataaat |
34312885 |
T |
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| Q |
118 |
tcaaattgcctatgaagagataagatcaaaggttgaagacacgtaagagcatattaagacatgtgtcgaagacttttaatttatggttgttatttatggt |
217 |
Q |
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| T |
34312886 |
tcaaattgtctatgaaaaggtaagatcaaaggttgaagacacgtgagagcatattaagacatatgtcgaagacttttaatttatggttgttatttacggt |
34312985 |
T |
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| Q |
218 |
tacttattaattatgtatatatagaagttttgaataggaaaaataa |
263 |
Q |
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| T |
34312986 |
tacttattaattatctatatatagaagttttgaataggaaaaataa |
34313031 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 30703178 - 30703104
Alignment:
| Q |
87 |
ttcaaattcattcagtttcgacagaataaattcaaattgcctatgaagagataagatcaaaggttgaagacacgt |
161 |
Q |
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| T |
30703178 |
ttcaaaatcattcagcttcgacagaataaattcaaattgtctgtaaagagacaaggtcaaaggttgaaggcacgt |
30703104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 74206 - 74087
Alignment:
| Q |
94 |
tcattcagtttcgacagaataaattcaaattgcctatgaagagataagatcaaa-ggttgaagacacgtaagagcatattaagacatgtgtcgaagactt |
192 |
Q |
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| T |
74206 |
tcatttagcttcgacaaaagacattcaaattgcttacgaagaggcaagataaaaaggtcgaagacacgtcgaagcatatcaagatatgtgtcgaagactt |
74107 |
T |
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| Q |
193 |
ttaatttatggttgttattt |
212 |
Q |
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| T |
74106 |
ttagtttgtgactgttattt |
74087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 23739634 - 23739540
Alignment:
| Q |
94 |
tcattcagtttcgacagaataaattcaaattgcctatgaagagataagatc-aaaggttgaagacacgtaagagcatattaagacatgtgtcgaag |
188 |
Q |
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| T |
23739634 |
tcatttagcttcgacagaagaaattcaaattgcttatgaggag-gaagatcaaaaggttgaagataaatgggagcatatcaagacatgtgtcgaag |
23739540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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