View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_high_18 (Length: 241)
Name: NF17329_high_18
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 29252756 - 29252962
Alignment:
| Q |
18 |
atatcatgtcgttctctcctcactttatttactctctgcaagttctttatggtttaatgatccaactctagccttattccagacattgttataatggagt |
117 |
Q |
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| T |
29252756 |
atatcatgtcgttctcgac--actttatttactctctgcaagttctttatggtttaatgatccgactctagccttattccagatattgttataatggagt |
29252853 |
T |
|
| Q |
118 |
tcgaccacattgtagaaataaatttgtagaaagcaaattatcccttattccggtaaataggctttcaatggaaaacgtgggcataaatatagagtgggga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29252854 |
tcgaccacattgtagaaataaatttgtagaaagcaaattatcccttattccggtaaataggctttcaatggaaaacgtgggcataaatatagagtggaga |
29252953 |
T |
|
| Q |
218 |
acatgcaaa |
226 |
Q |
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||||||||| |
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| T |
29252954 |
acatgcaaa |
29252962 |
T |
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