View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_high_2 (Length: 520)
Name: NF17329_high_2
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Original strand, 33840799 - 33841282
Alignment:
| Q |
13 |
aacctgtggccggaacgtgttcacggagtcgcagtgatgcgggtggagctgataggattacaaaaacaagattttgttatgttcctttctattgtaaatc |
112 |
Q |
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| T |
33840799 |
aaccggtggcgggaacgtgttcacggtgtcgcagtggtgccagtgtagctgatatgattacacaaacaagattttgttatgttcctttctattgtaaatc |
33840898 |
T |
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| Q |
113 |
ttggaaagctattttatgcacttcttgtggagcaattctcaagtcttacagataagaaataccatatatcattttatatctattgattggtctatagttt |
212 |
Q |
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| T |
33840899 |
ttggaaagctattttatgcactttttgtggagcaattctcaagtcttacagataagaaataccatatatcattttatatctattgattggtctatagttt |
33840998 |
T |
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| Q |
213 |
catcttttccctccactctatcaagattttgagtgtataacatatactcatattttgatttgatacgagtttaatgtatattgacttcttactttaaatc |
312 |
Q |
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| T |
33840999 |
catcttttccctccactctatcaagattttgagtgtataacatatactcatattttgatttgatacgagtttaatgtatattgacttcttactttaaatc |
33841098 |
T |
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| Q |
313 |
aagcaatgtttatgagattaaaagaaatcatattgtacctaaaatttcaattttatttataaatttcaggtacacgtaatattttaatattttaaccagt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33841099 |
aagcaatgtttatgagattaaaagaaatcatattgtacctaaaatttcaattttatttataaatttcaggtacacgtaatattttaatattttaaccagt |
33841198 |
T |
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| Q |
413 |
atccatgatgtttccattcaaaatatactgtacggagtttatgaaaattgaaattggattgatccagaattttcacatattcgccatgcaat |
504 |
Q |
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|| ||| |||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33841199 |
attcataatgtttccattccaaata-----tacggagtttattta---tgaaattggattgatccagaattttcacatattcgccatgcaat |
33841282 |
T |
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