View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_high_5 (Length: 383)
Name: NF17329_high_5
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 3723038 - 3723417
Alignment:
| Q |
1 |
ttcttctatccattcacactaataatgaccatacaagtaagtaagcaaatggttccctttcatttttagaattagaagcttcaatcattcaatcatacaa |
100 |
Q |
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| T |
3723038 |
ttcttctatccattcacactaataatgaccatacaagtaagtaagcaaatggttccctttcatttttagaattagaagcttcaatcattcaatcatacaa |
3723137 |
T |
|
| Q |
101 |
gtaagaaggtgtatttttcacttaaaagttgtaataaatttaactaattcatttgttcttttataaaacaatgcaaagtaattttcctacatacatataa |
200 |
Q |
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| T |
3723138 |
gtaagaaggtgtattttttacttaacagttgtaataaatttaactaattcatttgttcttttataaaacaatgtaaagtaattttcctgcatacatataa |
3723237 |
T |
|
| Q |
201 |
ggagcaagtaagtattttatcaaacaaaacaaactgtcaacacagaagaatttttcaatgtacctaaattcacatgaacatcatcatcaactttgacata |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723238 |
ggagcaagtaagaattttatcaaacaaaacaaactgtaaacgcagaagaatttttcaatgtacctaaattcacatgaacatcatcatcaactttgacata |
3723337 |
T |
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| Q |
301 |
aaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgatagttccaaatattcttcgacat |
380 |
Q |
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| T |
3723338 |
aaattctgcatcccacaaggcaagaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcgacat |
3723417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 17124808 - 17124754
Alignment:
| Q |
261 |
tacctaaattcacatgaacatcatcatcaactttgacataaaattctgcatccca |
315 |
Q |
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| T |
17124808 |
tacctatatttacatgaacatcgtcatcaactttgacataaaaatcagcatccca |
17124754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 37186385 - 37186483
Alignment:
| Q |
261 |
tacctaaattcacatgaacatcatcatcaactttgacataaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgata |
359 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||| ||| || || |||||||||||| |||| |||| | ||||||||| || ||||| ||||||| |
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| T |
37186385 |
tacctatatttacatgaacatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataggtctttgtctttgctgata |
37186483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 33084487 - 33084541
Alignment:
| Q |
261 |
tacctaaattcacatgaacatcatcatcaactttgacataaaattctgcatccca |
315 |
Q |
| |
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|||||||||| ||||||||||| ||||| ||||||||||| || || |||||||| |
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| T |
33084487 |
tacctaaattgacatgaacatcgtcatctactttgacatagaaatcagcatccca |
33084541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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