View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17329_high_9 (Length: 331)

Name: NF17329_high_9
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17329_high_9
NF17329_high_9
[»] chr4 (17 HSPs)
chr4 (38-317)||(22990295-22990574)
chr4 (38-317)||(22714651-22714930)
chr4 (38-317)||(28948908-28949187)
chr4 (38-292)||(22696918-22697172)
chr4 (57-292)||(46956624-46956859)
chr4 (1-45)||(22714959-22715003)
chr4 (1-45)||(22990222-22990266)
chr4 (93-144)||(22714909-22714960)
chr4 (93-144)||(22990265-22990316)
chr4 (93-144)||(28949166-28949217)
chr4 (1-45)||(28949216-28949260)
chr4 (93-140)||(46956572-46956619)
chr4 (93-144)||(22696888-22696939)
chr4 (153-195)||(22696888-22696930)
chr4 (153-201)||(22714912-22714960)
chr4 (153-201)||(22990265-22990313)
chr4 (153-201)||(28949169-28949217)
[»] scaffold0009 (4 HSPs)
scaffold0009 (38-317)||(200524-200813)
scaffold0009 (1-45)||(200842-200886)
scaffold0009 (93-144)||(200792-200843)
scaffold0009 (153-201)||(200795-200843)
[»] chr8 (3 HSPs)
chr8 (38-292)||(19646352-19646606)
chr8 (153-201)||(19646322-19646370)
chr8 (93-144)||(19646322-19646373)
[»] chr7 (3 HSPs)
chr7 (38-292)||(20087654-20087908)
chr7 (93-140)||(20087624-20087671)
chr7 (153-200)||(20087624-20087671)
[»] chr5 (3 HSPs)
chr5 (38-292)||(22808138-22808392)
chr5 (91-144)||(22808106-22808159)
chr5 (153-193)||(22808108-22808148)
[»] chr1 (3 HSPs)
chr1 (38-292)||(4344265-4344518)
chr1 (93-144)||(4344235-4344286)
chr1 (153-201)||(4344235-4344283)
[»] chr2 (2 HSPs)
chr2 (38-292)||(23362369-23362610)
chr2 (93-144)||(23362589-23362640)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 38 - 317
Target Start/End: Original strand, 22990295 - 22990574
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990295 actatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 22990394  T
Q  138 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990395 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 22990494  T
Q  238 acgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttgnnnnnnngcttcggatttgttgttc 317  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||    
T  22990495 atgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttattttgtttttttgcttcggatttgttgttc 22990574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 38 - 317
Target Start/End: Complemental strand, 22714930 - 22714651
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22714930 actatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 22714831  T
Q  138 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 237  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22714830 tatgttttgcctttcaattaggaagtaatctaaaaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 22714731  T
Q  238 acgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttgnnnnnnngcttcggatttgttgttc 317  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||    
T  22714730 atgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttattttgtttttttgcttcggatttgttgttc 22714651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 38 - 317
Target Start/End: Complemental strand, 28949187 - 28948908
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28949187 actatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 28949088  T
Q  138 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 237  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  28949087 tatgttttgcctttcaattaggaagtaatctaaaaagtgctagtaactatgaagtactcttatgaagtacaaataacttatgtaatgtttctatccctta 28948988  T
Q  238 acgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttgnnnnnnngcttcggatttgttgttc 317  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  28948987 atgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttgtttttttgcttcggatttgttgttc 28948908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 22696918 - 22697172
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 137  Q
    ||||||||||| | || |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  22696918 actatgaagtactattttgtttagtctttaatgttgtaatgctctgttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtactgt 22697017  T
Q  138 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 237  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22697018 tatgtttttcctttcaattaggaagtaatctaagaagtggtagtaactatgaagtactcttatgaagtactagtaacttatgtaatgtttctatccctta 22697117  T
Q  238 acgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttg 292  Q
    | |||  ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22697118 atgaagacttatgttgtgtgataattatgctcgtatttatggttcacttatgttg 22697172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 57 - 292
Target Start/End: Original strand, 46956624 - 46956859
Alignment:
Q  57 tttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaatt 156  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||| ||||    
T  46956624 tttagtctttaatgttgtaatgttccattatctttaaattaagaagtaatctaggaagtactagtaactatcaagtactgttatgttttgccttttaatt 46956723  T
Q  157 aggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgt 256  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  46956724 aggaagtaatctaagaagtgctagtaactatgaagtactattatgaagtactagtaacttatgtaatgtttctataccttaatgaaggcttatgttgtgt 46956823  T
Q  257 gataattatgctcgtatttttggttcacttatgttg 292  Q
    |||||||||||| |||||||| ||||||||||||||    
T  46956824 gataattatgcttgtattttttgttcacttatgttg 46956859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22715003 - 22714959
Alignment:
Q  1 agtactatgaattaagaagtaatctaagctaggatgtactatgaa 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  22715003 agtactatgaattaagaagtaatctaagataggatgtactatgaa 22714959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22990222 - 22990266
Alignment:
Q  1 agtactatgaattaagaagtaatctaagctaggatgtactatgaa 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  22990222 agtactatgaattaagaagtaatctaagataggatgtactatgaa 22990266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 22714960 - 22714909
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 144  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  22714960 aattaagaagtaatctaggaagtattagtaactatgaagtactgttatgttt 22714909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 22990265 - 22990316
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 144  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  22990265 aattaagaagtaatctaggaagtattagtaactatgaagtactgttatgttt 22990316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 28949217 - 28949166
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 144  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  28949217 aattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgttt 28949166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28949260 - 28949216
Alignment:
Q  1 agtactatgaattaagaagtaatctaagctaggatgtactatgaa 45  Q
    |||||||||| |||||||| |||||||||||||||||||||||||    
T  28949260 agtactatgagttaagaagcaatctaagctaggatgtactatgaa 28949216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 46956572 - 46956619
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttat 140  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||||    
T  46956572 aattaagaagtaatctaggaagtactagtaactatgaagcactgttat 46956619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 22696888 - 22696939
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 144  Q
    ||||||||||||||||| |||||||  |||||||||||||||| || |||||    
T  22696888 aattaagaagtaatctacgaagtactagtaactatgaagtactattttgttt 22696939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 22696888 - 22696930
Alignment:
Q  153 aattaggaagtaatctaagaagtgctagtaactatgaagtact 195  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  22696888 aattaagaagtaatctacgaagtactagtaactatgaagtact 22696930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 22714960 - 22714912
Alignment:
Q  153 aattaggaagtaatctaagaagtgctagtaactatgaagtactcttatg 201  Q
    ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  22714960 aattaagaagtaatctaggaagtattagtaactatgaagtactgttatg 22714912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 22990265 - 22990313
Alignment:
Q  153 aattaggaagtaatctaagaagtgctagtaactatgaagtactcttatg 201  Q
    ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  22990265 aattaagaagtaatctaggaagtattagtaactatgaagtactgttatg 22990313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 28949217 - 28949169
Alignment:
Q  153 aattaggaagtaatctaagaagtgctagtaactatgaagtactcttatg 201  Q
    ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  28949217 aattaagaagtaatctaggaagtaatagtaactatgaagtactgttatg 28949169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 38 - 317
Target Start/End: Complemental strand, 200813 - 200524
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtact-- 135  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  200813 actatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactat 200714  T
Q  136 --------gttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgttt 227  Q
            |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200713 gaagtactgttatgtttttcctttcaattaggaattaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgttt 200614  T
Q  228 ctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttgnnnnnnngcttcggatttgttgttc 317  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||    
T  200613 ctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttattttgtttttttgcttcggatttgttgttc 200524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 200886 - 200842
Alignment:
Q  1 agtactatgaattaagaagtaatctaagctaggatgtactatgaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  200886 agtactatgaattaagaagtaatctaagctaggatgtactatgaa 200842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 200843 - 200792
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 144  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  200843 aattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgttt 200792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 200843 - 200795
Alignment:
Q  153 aattaggaagtaatctaagaagtgctagtaactatgaagtactcttatg 201  Q
    ||||| ||||||||||| |||||  |||||||||||||||||| |||||    
T  200843 aattaagaagtaatctaggaagtaatagtaactatgaagtactgttatg 200795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 19646352 - 19646606
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 137  Q
    ||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||    
T  19646352 actatgaagtactcttatgtttaatctttaatgttgtaatgttctgttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtattgt 19646451  T
Q  138 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 237  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19646452 tatgtttttcctttcaattaggaagtaatctaagaagtggtagtaactatgaagtactcttatgaagtaccagtaacttatgtaatatttctatccctta 19646551  T
Q  238 acgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttg 292  Q
    | |||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  19646552 atgaagacttatgttgtgtgataattatgcttgtatttttggttcacttatgttg 19646606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 19646322 - 19646370
Alignment:
Q  153 aattaggaagtaatctaagaagtgctagtaactatgaagtactcttatg 201  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  19646322 aattaagaagtaatctacgaagtactagtaactatgaagtactcttatg 19646370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 19646322 - 19646373
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 144  Q
    ||||||||||||||||| |||||||  |||||||||||||||| ||||||||    
T  19646322 aattaagaagtaatctacgaagtactagtaactatgaagtactcttatgttt 19646373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 20087654 - 20087908
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 137  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  20087654 actatgaagtactgttatatttagtctttaatgttgtaatgttccgttatctttaaattaagaagtaatctagaaagtactagtaactatgaagtactgt 20087753  T
Q  138 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 237  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  20087754 tatgttttgccttttaattaggaagtaatctaagaagtactagtaactatgaagtactattatgaagtactagtaacttatgtaatgtttctatccctta 20087853  T
Q  238 acgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttg 292  Q
    | |||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  20087854 atgaagacttatgttgtgtgataattatgcttgtatttttggttcacttatgttg 20087908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 20087624 - 20087671
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttat 140  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||    
T  20087624 aattaagaagtaatctaggaagtactagtaactatgaagtactgttat 20087671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 20087624 - 20087671
Alignment:
Q  153 aattaggaagtaatctaagaagtgctagtaactatgaagtactcttat 200  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||| ||||    
T  20087624 aattaagaagtaatctaggaagtactagtaactatgaagtactgttat 20087671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 22808138 - 22808392
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |    
T  22808138 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttatctttaaattaagaagtaatctaggaagtactagtaactatgaagtactat 22808237  T
Q  138 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 237  Q
    ||| |||| | |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  22808238 tatatttttcttttcaattaggaagtaatctaagaagtggtagtaaccatgaagtactcttatgaagtactagtaacttatgtaatttttttatccctta 22808337  T
Q  238 acgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttg 292  Q
    | |||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22808338 atgaagacttatgttgtgtgataattatgctcgtatttttggttcacttatgttg 22808392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 22808106 - 22808159
Alignment:
Q  91 taaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 144  Q
    ||||||||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  22808106 taaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgttt 22808159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 22808108 - 22808148
Alignment:
Q  153 aattaggaagtaatctaagaagtgctagtaactatgaagta 193  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  22808108 aattaagaagtaatctatgaagtactagtaactatgaagta 22808148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 4344265 - 4344518
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 137  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||    
T  4344265 actatgaagtactgttatgtttagtctttaatgtt-taatgtttcgttgtctttaaattaagaagtaatctaggaagtaccagtaactttgaagtattgt 4344363  T
Q  138 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 237  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4344364 tatgtttttcctttcaattaggaagtaatctaagaagtggtagtaactatgaagtactcttatgaagtactagtaacttatgtaatgtttctatccctta 4344463  T
Q  238 acgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttg 292  Q
    | |||  |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  4344464 atgaagacttatgttgtgtgataattatgcttgtattttttgttcacttatgttg 4344518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 4344235 - 4344286
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 144  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||    
T  4344235 aattaagaagtaatctacgaagtactagtaactatgaagtactgttatgttt 4344286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 4344235 - 4344283
Alignment:
Q  153 aattaggaagtaatctaagaagtgctagtaactatgaagtactcttatg 201  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||| |||||    
T  4344235 aattaagaagtaatctacgaagtactagtaactatgaagtactgttatg 4344283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 38 - 292
Target Start/End: Complemental strand, 23362610 - 23362369
Alignment:
Q  38 actatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgt 137  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  23362610 actattaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtactaataactatgaagtactgt 23362511  T
Q  138 tatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatccctta 237  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||             ||||||||||||||||||| |||||||||    
T  23362510 tatgtttttcctttcaattaggaagtaatctaagaagtggtagtaaccatgaagtact-------------agtaacttatgtaatgtttttatccctta 23362424  T
Q  238 acgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttg 292  Q
    | |||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23362423 atgaagacttatgttgtgtgataattatgctcgtatttttggttcacttatgttg 23362369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 23362640 - 23362589
Alignment:
Q  93 aattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttt 144  Q
    ||||||||||||||||| |||||||  |||||||| ||||| ||||||||||    
T  23362640 aattaagaagtaatctacgaagtactagtaactattaagtattgttatgttt 23362589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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