View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_1 (Length: 908)
Name: NF17329_low_1
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Complemental strand, 4650950 - 4650570
Alignment:
| Q |
15 |
aattaatttgcacatacataattctttcttgttcaacattgttaatatattttctaacaatatttgatagggtgaacccatacaacgaaacattgtttaa |
114 |
Q |
| |
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| T |
4650950 |
aattaatttgcacatacataattctttcttgttcaacattgttaatatattttctaacaatatttgatagggtgaacccatacaacgaaacattgtttaa |
4650851 |
T |
|
| Q |
115 |
tgcatgggttgatgaaggagcagcaccagcactaccagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacagga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650850 |
tgcatgggttgatgaaggagcagcaccagcactaccagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacagga |
4650751 |
T |
|
| Q |
215 |
agaccactcaaacagaaggacattacagctaagaacttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650750 |
agaccactcaaacagaaggacattacagctaagaacttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaat |
4650651 |
T |
|
| Q |
315 |
taattgttcataggagaaagtaattggaattatgagtcataaccttctatatttacaatagagtatattcaatgtcatgat |
395 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650650 |
taattgttcataggagaaagtaattggaattatgagtcataaccttctatatttacaatagagtatattcaatgtcatgat |
4650570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 488 - 894
Target Start/End: Complemental strand, 4650481 - 4650073
Alignment:
| Q |
488 |
gctaggtgaattatttcagtaa---aaataaataaactaggtgaattattgctgacatataaaacctgaaaaggacatattaggtaactacnnnnnnnnn |
584 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4650481 |
gctaggtgaattatttcagtaataaaaataaataaactaggtgaattattgctgacatatacaacctgaaaaggacatattaggtaactacaaaaaaaa- |
4650383 |
T |
|
| Q |
585 |
ggacatattaggtgatgtgtgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgc |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650382 |
ggacatattaggtgatgtgtgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgc |
4650283 |
T |
|
| Q |
685 |
agggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtg |
784 |
Q |
| |
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| T |
4650282 |
agggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtg |
4650183 |
T |
|
| Q |
785 |
gagaccaatggagtgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctctatgctt |
884 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650182 |
gagaccaatggagtgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctctatgctt |
4650083 |
T |
|
| Q |
885 |
aaagaataat |
894 |
Q |
| |
|
|||||||||| |
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|
| T |
4650082 |
aaagaataat |
4650073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 699 - 894
Target Start/End: Original strand, 23681988 - 23682186
Alignment:
| Q |
699 |
atatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggagt |
798 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23681988 |
atatcatggtaaaatagcatttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaatagtggagaccaatggagt |
23682087 |
T |
|
| Q |
799 |
gatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctt---tactacattgcttgattaatctctctatgcttaaagaataat |
894 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23682088 |
gatattcttggaaccaacactggtgaaaggactttcaaactccctgatcctctttactactacattgcttgattaatctctctatgcttaaagaataat |
23682186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 23679421 - 23679594
Alignment:
| Q |
78 |
ttgatagggtgaacccatacaacgaaacattgttt-aatgcatgggttgatgaaggagcagcac-----cagcactaccagagacacaaaaattgtacaa |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23679421 |
ttgatagggtgaacccatacaacgaaacattgttttaatgcatgggttgatgaaggagcagcacaacaccagcactaccagagacacaaaaattgtacaa |
23679520 |
T |
|
| Q |
172 |
caaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagcta |
245 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
23679521 |
caaactggtaaatcttggtgtcaaatttgtgttcttaacaggaagaccactcaaacagaaggacattacggcta |
23679594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 698 - 863
Target Start/End: Complemental strand, 4645975 - 4645810
Alignment:
| Q |
698 |
tatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggag |
797 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||| | || |||||||||| |||||| ||||||||| |||||| |||||||| |
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| T |
4645975 |
tatatcatggtaaaacagcagttacatacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaacattggagatcaatggag |
4645876 |
T |
|
| Q |
798 |
tgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgc |
863 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
4645875 |
tgatattcttggaaccaatactggtgaaaggactttcaagctccctgatcccctctactacattgc |
4645810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 23680683 - 23680759
Alignment:
| Q |
239 |
acagctaagaacttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
315 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23680683 |
acagctaagaacttgaaacaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
23680759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 78 - 254
Target Start/End: Complemental strand, 4646522 - 4646346
Alignment:
| Q |
78 |
ttgatagggtgaacccatacaacgaaacattgtttaatgcatgggttgatgaaggagcagcaccagcactaccagagacacaaaaattgtacaacaaact |
177 |
Q |
| |
|
||||||||||| | |||||||| || ||||| |||||| |||||||||| ||| ||||||||||||| || || | ||||||||||||| ||| | |
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|
| T |
4646522 |
ttgatagggtggaaccatacaatgatacattatttaatcaatgggttgatcttggaacagcaccagcacttcctgaatctaaaaaattgtacaataaatt |
4646423 |
T |
|
| Q |
178 |
ggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttga |
254 |
Q |
| |
|
| | ||||||| | |||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
4646422 |
gttgtctcttggtatcaagattgcgttcttaacaggcagaccactcaaacagaaagaaattacagctaagaacttga |
4646346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 489 - 624
Target Start/End: Original strand, 23681394 - 23681528
Alignment:
| Q |
489 |
ctaggtgaattatttcagtaaaaataaataaactaggtgaat-tattgctga-catataaaacctgaaaaggacatattaggtaactacnnnnnnnnngg |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| || |
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|
| T |
23681394 |
ctaggtgaattatttcagtaaaaataaataaactaggtgaataaattgctgaccatattcaaactgaaaaggacatattaggtaactac-aaaaaaaagg |
23681492 |
T |
|
| Q |
587 |
acatattaggtgatgtgtgaggggcatgtcaattatta |
624 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |
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|
| T |
23681493 |
acatattaggtga--tgtgagggacatgtcaattatta |
23681528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 23679330 - 23679380
Alignment:
| Q |
25 |
cacatacataattctttcttgttcaacattgttaatatattttctaacaat |
75 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23679330 |
cacatatataattctttcttgtttaacattgttaatatattttctaacaat |
23679380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 670 - 791
Target Start/End: Complemental strand, 41872375 - 41872254
Alignment:
| Q |
670 |
caaatttatggttgcagggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaa |
769 |
Q |
| |
|
||||||| |||| |||||||||| | |||||||||||||||| |||||| ||||||||| || |||||||||||||| || |||||||||| | || |
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| T |
41872375 |
caaatttgtggtctcagggatacatcaatatatcatggtaaaacagcagttacatacaaatcgtcagagagaaagaagctggaggaagaaggatacaaaa |
41872276 |
T |
|
| Q |
770 |
ttattggaaacagtggagacca |
791 |
Q |
| |
|
| |||||||||| |||||||| |
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|
| T |
41872275 |
tcattggaaacataggagacca |
41872254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 306
Target Start/End: Complemental strand, 41872709 - 41872538
Alignment:
| Q |
135 |
cagcaccagcactaccagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaagga |
234 |
Q |
| |
|
||||||||||||| ||||| | |||||| | ||||| ||||| | ||||||| | ||||||| ||||||||| |||||| || |||||||||| | |
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|
| T |
41872709 |
cagcaccagcactgccagaatctcaaaaactttacaataaactattgtctcttggtatcaagattgtattcttaactggaagagcaaacaaacagaagaa |
41872610 |
T |
|
| Q |
235 |
cattacagctaagaacttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttcta |
306 |
Q |
| |
|
||| ||||| ||||| |||| | ||||||||||| ||| ||||| ||||||| |||||||||||||| |
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|
| T |
41872609 |
cataacagccaagaatttgagacttgctggctaccatacacgggaaaaactaatttgcaagtaagttttcta |
41872538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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