View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_11 (Length: 324)
Name: NF17329_low_11
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 37319374 - 37319073
Alignment:
| Q |
18 |
tatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaatgagattagcac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37319374 |
tatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagagacaatagcccacgggtttctaaaataagtttgaatgagattagcac |
37319275 |
T |
|
| Q |
118 |
gccatcttttccacggtttcttgcagtaatcactcatactcatcctcaccacaccaagtactccatgacgatccactgttatgtctttagacaacgagtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37319274 |
gccatcttttccacggtttcttgcagtaatcactcatactcatcctcaccacatcaagtactccatgacgatccactgttatgtctttagacaacgagtt |
37319175 |
T |
|
| Q |
218 |
aaacaatttggaaacaactttatcgcttccaagagcattgattatgatcccacttcggttaagaagtgcaacatccatgttactgtcgatgatgatgtcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
37319174 |
aaacaatttggaaacaactttatcgcttccaagagcattgattatgatcccacttcggttaagaagtgcaacatccacgttactgtcgatgatggtgtcc |
37319075 |
T |
|
| Q |
318 |
at |
319 |
Q |
| |
|
|| |
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|
| T |
37319074 |
at |
37319073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 37283627 - 37283356
Alignment:
| Q |
18 |
tatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaatgagattagcac |
117 |
Q |
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|||| |||||||| |||||| | |||||||||||| | ||||||||||||||| || |||||||| ||||| ||||||||||||||||||||| | |||| |
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| T |
37283627 |
tatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcac |
37283528 |
T |
|
| Q |
118 |
gccatcttttccacggtttcttgcagtaatcactcatactcatcctcaccacaccaagtactccatgacgatccactgttatgtctttagacaacgagtt |
217 |
Q |
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|||| ||||||||||| ||||| |||||| | |||||||| | ||||| | ||||| |||| | |||||||| || || ||||| | ||| ||||| |
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| T |
37283527 |
gccaacttttccacggcttcttacagtaagaaatcatactctttgtcacctcttcaagttctccttcacgatccattgggatttcttttgccaaggagtt |
37283428 |
T |
|
| Q |
218 |
aaacaatttggaaacaactttatcgcttccaagagcattgattatgatcccacttcggttaagaagtgcaac |
289 |
Q |
| |
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|||||||||| |||| |||| || || ||||| ||||||||||||||||||||| | |||| |||||| |
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| T |
37283427 |
gaacaatttggcaacagctttgtcactctcaagatagttgattatgatcccacttcggatgagaattgcaac |
37283356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 37245165 - 37244910
Alignment:
| Q |
18 |
tatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaatgagattagcac |
117 |
Q |
| |
|
|||| |||||||| |||||| | |||||||||||| | ||||||||||||||| || |||||||| ||||| ||||||||||||||||||||| | |||| |
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|
| T |
37245165 |
tatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcac |
37245066 |
T |
|
| Q |
118 |
gccatcttttccacggtttcttgcagtaatcactcatactcatcctcaccacaccaagtactccatgacgatccactgttatgtctttagacaacgagtt |
217 |
Q |
| |
|
|||| |||||||| ||||| | || || | ||||| || || |||||| | ||||| | |||| ||||||| | || ||||| | ||| ||||| |
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| T |
37245065 |
gccaacttttccaaggtttttcacaatagtacttcatattcgtcatcaccatatcaagttcaccattgcgatccatggagatttctttggccaatgagtt |
37244966 |
T |
|
| Q |
218 |
aaacaatttggaaacaactttatcgcttccaagagcattgattatgatcccacttc |
273 |
Q |
| |
|
|||||||||| |||| ||||||| | |||||||| ||||||| ||||||||||| |
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|
| T |
37244965 |
gaacaatttggccacaagtttatcgttcccaagagcgttgattaggatcccacttc |
37244910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 37965793 - 37965690
Alignment:
| Q |
55 |
tagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaatgagattagcacgccatcttttccacggtttcttgcagtaatcactcat |
154 |
Q |
| |
|
||||| |||||||||| || |||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||| |||||||| |||| | |||||| |
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| T |
37965793 |
tagcaacaacaagagacaccatagcccaagggctcctaaaataagtacgaatgagactagcacgccatcttttccaaggtttcttatagtagtgactcat |
37965694 |
T |
|
| Q |
155 |
actc |
158 |
Q |
| |
|
|||| |
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|
| T |
37965693 |
actc |
37965690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 16571869 - 16571989
Alignment:
| Q |
22 |
cagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaatgagattagcacgcca |
121 |
Q |
| |
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||||||||| | |||| | ||||||||| || || ||||||||||| || || |||| ||| ||||| ||||||||||| ||| ||||||| |||||||| |
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| T |
16571869 |
cagtttgaatactagtaagagcaaaaagaaagatggcagcaacaagtgacaccatagaccaagggttcctaaaataagtgtgagtgagattggcacgcca |
16571968 |
T |
|
| Q |
122 |
tcttttccacggtttcttgca |
142 |
Q |
| |
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| | ||||||||||||||||| |
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|
| T |
16571969 |
tttattccacggtttcttgca |
16571989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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