View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_12 (Length: 280)
Name: NF17329_low_12
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 44449986 - 44450088
Alignment:
| Q |
163 |
gagtactttgtactccataaatgatacgagtacttcataactagtcttttaaaagactttcacatatataaaaatgatatgaatattccataaatgaata |
262 |
Q |
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| T |
44449986 |
gagtattttgtactccataaaggatacgagtattccatcattagtcttttaaaagactttcacatatataaaaatgatatgaatactacataaatgaata |
44450085 |
T |
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| Q |
263 |
tct |
265 |
Q |
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||| |
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| T |
44450086 |
tct |
44450088 |
T |
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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 44449824 - 44449921
Alignment:
| Q |
1 |
cttagattgagattttaaaagagtgtattatattccttnnnnnnngtgtattatcaaaaatattgaaattttaaaaggctgtgtagagatatatcggc |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44449824 |
cttagattgagattttaaaagagtgtattatattccttaaaaaaaatgtattatcaaaaatattgaaattttaaaaggctgtgtagaaatatatcggc |
44449921 |
T |
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