View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17329_low_16 (Length: 252)

Name: NF17329_low_16
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17329_low_16
NF17329_low_16
[»] chr4 (3 HSPs)
chr4 (139-202)||(29252257-29252320)
chr4 (199-249)||(29252529-29252579)
chr4 (18-65)||(29252135-29252182)
[»] chr1 (2 HSPs)
chr1 (142-199)||(40123129-40123186)
chr1 (32-65)||(50052330-50052363)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 29252257 - 29252320
Alignment:
Q  139 tgtatctcgagcttaattgtgaatccactcaaaagagtgtcattatatcatgttgtaaatcgat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29252257 tgtatctcgagcttaattgtgaatccactcaaaagagtgtcattatatcatgttgtaaatcgat 29252320  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 29252529 - 29252579
Alignment:
Q  199 cgatttgcttcagaaagaatactcataaggtttggtgagactgttgaagaa 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29252529 cgatttgcttcagaaagaatactcataaggtttggtgagactgttgaagaa 29252579  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 29252135 - 29252182
Alignment:
Q  18 atatcatctgatgtatggtatcatgagatagttctacggaacatccat 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29252135 atatcatctgatgtatggtatcatgagatagttctacggaacatccat 29252182  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 40123186 - 40123129
Alignment:
Q  142 atctcgagcttaattgtgaatccactcaaaagagtgtcattatatcatgttgtaaatc 199  Q
    ||||||||||||||||| |||||||||| ||| ||||||||| ||| |||| ||||||    
T  40123186 atctcgagcttaattgtaaatccactcataagggtgtcattagatcgtgttctaaatc 40123129  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 50052363 - 50052330
Alignment:
Q  32 atggtatcatgagatagttctacggaacatccat 65  Q
    ||||||||||||||||||||||||||||||||||    
T  50052363 atggtatcatgagatagttctacggaacatccat 50052330  T

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