View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_18 (Length: 248)
Name: NF17329_low_18
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 47027683 - 47027850
Alignment:
| Q |
70 |
taaaagattgattcacctttcctta----ttcttgaaataagataagaaatcatacaaattaaagtcacttattaattcctcaaaacaagata---agaa |
162 |
Q |
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| T |
47027683 |
taaaagattgattcacctttccttaattattcttgaaataagataagaaatcatacaaattaaactcacttattaattcctcaaaacaagatatgttgtt |
47027782 |
T |
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| Q |
163 |
acta----ttgtatatgctgttttgataagtcgttgagttattggaaaatacagcattggcgcgcagagagt |
230 |
Q |
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| T |
47027783 |
tctacaacttgtata----attttgataagtcgttgagttattggaaaatacagcattggcgctcagagagt |
47027850 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47027586 - 47027655
Alignment:
| Q |
1 |
gattttaaaagggtggatgctcttgttcaccagctgaaaggcagcagctccaggtaatatattaatcttt |
70 |
Q |
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| T |
47027586 |
gattttaaaagggtggatgctcttgttcaccagctgaaaggcagcagctccaggtaatatattaatcttt |
47027655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36582524 - 36582466
Alignment:
| Q |
1 |
gattttaaaagggtggatgctcttgttcaccagctgaaaggcagcagctccaggtaata |
59 |
Q |
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| T |
36582524 |
gattttaagagaatggatgctcatgttcaccaattgaaaggtagcagctccaggtaata |
36582466 |
T |
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