View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_20 (Length: 244)
Name: NF17329_low_20
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 3722828 - 3723052
Alignment:
| Q |
20 |
ttgctgagatttaaaaaataaacaacatagggtgttagtgatgaatgttcatattgatcaacaattttggttgctttgtgataaacccatgccacataat |
119 |
Q |
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| T |
3722828 |
ttgctgagatttaaaaaataaacaacatagtgtgttagtgatgaatgttcatattgatcaacaattttggttgctttgtgataaacccatgccacataat |
3722927 |
T |
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| Q |
120 |
ctacacaaactttcactggttgaatagtgacatctattatgaattttctaaagaaggtggtcgaataaacttataccaaataaaaatttaatggatttta |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3722928 |
ctacacaaactttcactggttgaatagtgatatctattatgaattttctaaagaaggtggtcgaataaacttataccaaataaaaatttaatggatttta |
3723027 |
T |
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| Q |
220 |
tgccttttcattcttctatccattc |
244 |
Q |
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| T |
3723028 |
tgccttttcattcttctatccattc |
3723052 |
T |
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