View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17329_low_22 (Length: 238)
Name: NF17329_low_22
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 14754688 - 14754475
Alignment:
| Q |
10 |
gcagagaaggttgaagaaaaggatgcagctgagccgactcctcctcctgccgagaaacaggaggaaaaaccggttgaaccagctgcggttgaacatgtag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14754688 |
gcagagaaggttgaagaaaaggatgcagctgagccgactcctcctcctgccgagaaacaggaggaaaaaccggttgaaccagctgcggttgaacaagtag |
14754589 |
T |
|
| Q |
110 |
aaccaccaaaggcttgaaagtttgttgatcaagatcataaatatgttgtatatgtgtaatagtttgcatatactaaaaaattgttacatacaaatctctt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14754588 |
aaccaccaaaggcttgaaagtttgttgatcaagatcacaaatatgttgtatatgtgtaatagtttgcatatactaaaaaattgttacatacaaatctctt |
14754489 |
T |
|
| Q |
210 |
attcttttatatgt |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14754488 |
attcttttatatgt |
14754475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University