View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_23 (Length: 238)
Name: NF17329_low_23
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 34313034 - 34313251
Alignment:
| Q |
6 |
gtcacaaattataatattgtaatctttacgctcaaagtatctaagttacgagtgcatatcttctagtgaaacttttaatgaagaaagtgatatgaacatt |
105 |
Q |
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| T |
34313034 |
gtcacaaattagaatactgtaatctttaagctcaaagtatctaagttacgagtgcatatcttctagtgaaacttttaatggagaaagtgatatgaacatt |
34313133 |
T |
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| Q |
106 |
aataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagagaatctt |
205 |
Q |
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| T |
34313134 |
agtaccattcaattagttcaacgttga-ggccctgcatggagtgatggaaaataaatgacttagattttattggactcttcaattatagaagagaatctg |
34313232 |
T |
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| Q |
206 |
ctctcctaaattacattga |
224 |
Q |
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| T |
34313233 |
ctccactaagttacattga |
34313251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 34605426 - 34605507
Alignment:
| Q |
101 |
acattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggact |
182 |
Q |
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| T |
34605426 |
acatcaatactattcaattacttcaatattgaagattctgtatggagtagtgaaaaataagtgacttagatctcattggact |
34605507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 31228438 - 31228543
Alignment:
| Q |
101 |
acattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagaga |
200 |
Q |
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| T |
31228438 |
acatcaataccattcaattacttcaacgttgagggctccacatggagtagtagaaaataaatggcttagatctcactggactctccaatcacaagagaga |
31228537 |
T |
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| Q |
201 |
atcttc |
206 |
Q |
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|||||| |
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| T |
31228538 |
atcttc |
31228543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 23862093 - 23861998
Alignment:
| Q |
107 |
ataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagagaatc |
203 |
Q |
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| T |
23862093 |
ataccattcaattacttcaatattgaaggccc-acatggagtagtagaaaataaatggcttagatctcattggactctccgatcacaggagagaatc |
23861998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 8533884 - 8533778
Alignment:
| Q |
98 |
tgaacattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagag |
197 |
Q |
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| T |
8533884 |
tgaacattaataccattcaattacttcaatgttgaaggctccgcacggagtagtggaaaataaatggcttagatctcattgaactctcaagttacatgag |
8533785 |
T |
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| Q |
198 |
agaatct |
204 |
Q |
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||||||| |
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| T |
8533784 |
agaatct |
8533778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 34639669 - 34639606
Alignment:
| Q |
106 |
aataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttag |
169 |
Q |
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|||||||||||||||| ||||||||| ||| ||||||||||||| || |||||||||| ||||| |
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| T |
34639669 |
aataccattcaattacatcaatgttgtgggccctacatggagtagtgaaaaataaatggcttag |
34639606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 16443009 - 16443120
Alignment:
| Q |
101 |
acattaataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctccaattacaagagaga |
200 |
Q |
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|||| |||| ||||||||| |||||||||||||| || ||||| |||| ||||||||||||| |||||| | | |||||||||| | ||| |||||| |
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| T |
16443009 |
acatcaatatcattcaattgcttcaatgttgaggatctcacatgaagtagtggaaaataaatggtttagatatcaccggactctccagtcacatgagaga |
16443108 |
T |
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| Q |
201 |
atcttctctcct |
212 |
Q |
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|| | ||||||| |
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| T |
16443109 |
atttgctctcct |
16443120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 7256763 - 7256842
Alignment:
| Q |
107 |
ataccattcaattacttcaatgttgagggtcctacatggagtaatggaaaataaatgacttagatttaattggactctcc |
186 |
Q |
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||||||||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||| | | |||||||||| |
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| T |
7256763 |
ataccattcaattacttcaatgttgagggcatcccatgaagtagtggaaaataaatggcttagatctcactggactctcc |
7256842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 17177506 - 17177462
Alignment:
| Q |
158 |
taaatgacttagatttaattggactctccaattacaagagagaat |
202 |
Q |
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|||||||||||||||| ||||||||||||| | ||| |||||||| |
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| T |
17177506 |
taaatgacttagatttcattggactctccagtcacaggagagaat |
17177462 |
T |
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