View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17329_low_25 (Length: 237)

Name: NF17329_low_25
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17329_low_25
NF17329_low_25
[»] chr5 (1 HSPs)
chr5 (8-191)||(6055551-6055729)
[»] chr7 (1 HSPs)
chr7 (18-116)||(12894924-12895022)
[»] chr6 (2 HSPs)
chr6 (18-116)||(7103782-7103880)
chr6 (18-116)||(8790750-8790848)
[»] chr4 (1 HSPs)
chr4 (18-116)||(38233859-38233957)
[»] chr1 (4 HSPs)
chr1 (18-116)||(19004140-19004238)
chr1 (18-116)||(48198203-48198301)
chr1 (18-116)||(48206859-48206957)
chr1 (21-93)||(23326329-23326401)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 6055551 - 6055729
Alignment:
Q  8 tgaagaaattaagttatgaagtgttgcacaaggcaacacaagttttgcctttgtcttacatataaatggatgtgctaaattaaaaaatttgaaccgtgat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        
T  6055551 tgaagaaattaagttatgaagtgttgcacaaggcaacacaagttttacctttgtcttacatataaatggatgtgctaaattaaaaaatttgaaccg---- 6055646  T
Q  108 ttaaaaatattgaatatcctctcaatgatatagcataccatgtggcactaaaaaattgatttgattagaaaatccacgatccac 191  Q
     |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  6055647 -taaaaatattgaatatcctctcaatgatatagcataacatgtggcgctaaaaaattgatttgattagaaaatccacgatccac 6055729  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 12894924 - 12895022
Alignment:
Q  18 aagttatgaagtgttgcacaaggcaacacaagttttgcctttgtcttacatataaatggatgtgctaaattaaaaaatttgaaccgtgatttaaaaata 116  Q
    ||||||||||||| |||||| | ||||||||||| ||| | ||||||| | | ||||||| ||||| | ||||||| | |||| || ||||||||||||    
T  12894924 aagttatgaagtgctgcacatgccaacacaagttctgcttgtgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaaata 12895022  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 7103880 - 7103782
Alignment:
Q  18 aagttatgaagtgttgcacaaggcaacacaagttttgcctttgtcttacatataaatggatgtgctaaattaaaaaatttgaaccgtgatttaaaaata 116  Q
    ||||||||||||| |||||| | ||||||||||| ||| | ||||||| | | ||||||| ||||| | ||||||| | |||| || ||||||||||||    
T  7103880 aagttatgaagtgctgcacatgccaacacaagttctgcttgtgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaaata 7103782  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 8790750 - 8790848
Alignment:
Q  18 aagttatgaagtgttgcacaaggcaacacaagttttgcctttgtcttacatataaatggatgtgctaaattaaaaaatttgaaccgtgatttaaaaata 116  Q
    ||||||||||||| |||||| | ||||||||||| ||| | ||||||| | | ||||||| ||||| | ||||||| | |||| || ||||||||||||    
T  8790750 aagttatgaagtgctgcacatgccaacacaagttctgcttgtgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaaata 8790848  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 38233957 - 38233859
Alignment:
Q  18 aagttatgaagtgttgcacaaggcaacacaagttttgcctttgtcttacatataaatggatgtgctaaattaaaaaatttgaaccgtgatttaaaaata 116  Q
    ||||||||||||| |||||| | ||||||||||| ||| | ||||||| | | ||||||| ||||| | ||||||| | |||| || ||||||||||||    
T  38233957 aagttatgaagtgctgcacatgccaacacaagttctgcttgtgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaaata 38233859  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 19004140 - 19004238
Alignment:
Q  18 aagttatgaagtgttgcacaaggcaacacaagttttgcctttgtcttacatataaatggatgtgctaaattaaaaaatttgaaccgtgatttaaaaata 116  Q
    ||||||||||||| |||||| | ||||||||||| ||| | ||||||| | | ||||||| ||||| | ||||||| | |||| || ||||||||||||    
T  19004140 aagttatgaagtgctgcacatgccaacacaagttctgcttgtgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaaata 19004238  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 48198301 - 48198203
Alignment:
Q  18 aagttatgaagtgttgcacaaggcaacacaagttttgcctttgtcttacatataaatggatgtgctaaattaaaaaatttgaaccgtgatttaaaaata 116  Q
    ||||||||||||| |||||| | ||||||||||| ||| | ||||||| | | ||||||| ||||| | ||||||| | |||| || ||||||||||||    
T  48198301 aagttatgaagtgctgcacatgccaacacaagttctgcttgtgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaaata 48198203  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 48206957 - 48206859
Alignment:
Q  18 aagttatgaagtgttgcacaaggcaacacaagttttgcctttgtcttacatataaatggatgtgctaaattaaaaaatttgaaccgtgatttaaaaata 116  Q
    ||||||||||||| |||||| | ||||||||||| ||| | ||||||| | | ||||||| ||||| | ||||||| | |||| || ||||||||||||    
T  48206957 aagttatgaagtgctgcacatgccaacacaagttctgcttgtgtcttaaacaaaaatggaggtgctgacttaaaaattgtgaaacgcgatttaaaaata 48206859  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 23326401 - 23326329
Alignment:
Q  21 ttatgaagtgttgcacaaggcaacacaagttttgcctttgtcttacatataaatggatgtgctaaattaaaaa 93  Q
    ||||||||||||||||| | ||||||||||| ||| | ||||||| | | ||||||| ||||| | |||||||    
T  23326401 ttatgaagtgttgcacatgccaacacaagttctgcttgtgtcttaaacaaaaatggaggtgctgacttaaaaa 23326329  T

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