View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_26 (Length: 233)
Name: NF17329_low_26
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 40903109 - 40902909
Alignment:
| Q |
19 |
tttcttccctttgcaaaaagcaaaacacacaacattttttatgcacatcgcgaataacccctctactccataattctacccggattggtagcctatcttg |
118 |
Q |
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| T |
40903109 |
tttcttccctttgcaaaaagcaaaacacacaacattgttgatgcacatcgcgaataacccctctactccataattctacccgggttgttagcctatcttg |
40903010 |
T |
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| Q |
119 |
aagtaatctccaaccaaacatacagatttttgacggcaccaacgtttcccactagcgatgtgcagctgccataaaatcatcgccctattctgcagaatta |
218 |
Q |
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| T |
40903009 |
aagtaatctccaaccaaacatacagatttttgacggcaccaacgtttcccactagcgatgtgcagctgccataaaatcatcgccgtattctgccgaatta |
40902910 |
T |
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| Q |
219 |
t |
219 |
Q |
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| T |
40902909 |
t |
40902909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 30149954 - 30149769
Alignment:
| Q |
35 |
aaagcaaaacacacaacattttttatgcacatcgcgaataacccctctactccataattctacccggattggtagcctatcttgaagtaatctccaacca |
134 |
Q |
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|||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
30149954 |
aaagcaaaacacacaacattgttgatgcacgctgcgaataacccctctcctccataattctacccgggttggtagcctatcttgaagtaatctccatcca |
30149855 |
T |
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| Q |
135 |
aacatacagatttttgacggcaccaacgtttcccactagcgatgtgcagctgccataaa-atcatcgccctattctgcagaattat |
219 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||| | ||||||| |||||||||||||||| |
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| T |
30149854 |
aacatacaaatttttgacggcaccgacgtttcccactagcgatgcacagctaccataaataccatcgccgtattctgcagaattat |
30149769 |
T |
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