View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_28 (Length: 228)
Name: NF17329_low_28
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_28 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 22990578 - 22990795
Alignment:
| Q |
1 |
tatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatgttttttgtgacattcaaagcatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22990578 |
tatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatgttttttgtaacattcaaagcatgt |
22990677 |
T |
|
| Q |
101 |
ttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctgggggtagttttttggccaagggcctggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22990678 |
ttcttatggttttgcggctggtttggttgcggcttcaggtgctgttcctggcctgctaacctgctacggctgggggtagttttttggccaagggtctggt |
22990777 |
T |
|
| Q |
201 |
tggtttttgttgtctctg |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
22990778 |
tggtttttgttgtctctg |
22990795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 28948904 - 28948687
Alignment:
| Q |
1 |
tatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatgttttttgtgacattcaaagcatgt |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28948904 |
tatcctccttaaactctatatttcagttttaactagttatatataagctatatttgtaatgccatgatttcttatgttttttgtgacattcaaagcatgt |
28948805 |
T |
|
| Q |
101 |
ttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctgggggtagttttttggccaagggcctggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
28948804 |
ttcttatggttttgcggctggtttggttgcggcttcagctgctgttcctggcctgctaacctgctacggttgggggtagttttttggccaagggcctggt |
28948705 |
T |
|
| Q |
201 |
tggtttttgttgtctctg |
218 |
Q |
| |
|
||||||| ||||||||| |
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| T |
28948704 |
tggttttgtttgtctctg |
28948687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 22703454 - 22703322
Alignment:
| Q |
86 |
acattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctgggggtagtttttt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22703454 |
acattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcaggtgctgttcctggcctgctaacctgctacggctgggggtagtttttt |
22703355 |
T |
|
| Q |
186 |
ggccaagggcctggttggtttttgttgtctctg |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
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| T |
22703354 |
ggccaagggtctggttggtttttgttgtctctg |
22703322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 22714647 - 22714557
Alignment:
| Q |
1 |
tatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatgttttttgtgacattc |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22714647 |
tatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatgttttttgtaacattc |
22714557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 200520 - 200303
Alignment:
| Q |
1 |
tatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatgttttttgtgacattcaaagcatgt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
200520 |
tatcctccataaactatatatttcagttttaactagttatatataagctatatttgcaatgccatgatttcttatgttttttgtaacattcaaagcatgt |
200421 |
T |
|
| Q |
101 |
ttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctgggggtagttttttggccaagggcctggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
200420 |
ttcttatggttttgcggctggtttggttgcagcttcaggtgctgttcctggcctgctaacctgctacggctgggggtagttttttggccaagggtctggt |
200321 |
T |
|
| Q |
201 |
tggtttttgttgtctctg |
218 |
Q |
| |
|
|||||||||||||||||| |
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| T |
200320 |
tggtttttgttgtctctg |
200303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 20087940 - 20087992
Alignment:
| Q |
3 |
tcctccataaactctatatttcagttttaactagttatatataagctatattt |
55 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
20087940 |
tcctccataagctctatatttcagttttaactggttatatataagctctattt |
20087992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5928165 - 5928219
Alignment:
| Q |
1 |
tatcctccataaactctatatttcagttttaactagttatatataagctatattt |
55 |
Q |
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||||||| |||||||||||||||||||||||| | ||| |||||||||| ||||| |
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| T |
5928165 |
tatcctcaataaactctatatttcagttttaagtggttctatataagctctattt |
5928219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 5928350 - 5928378
Alignment:
| Q |
51 |
tatttgcaatgccatgatttcttatgttt |
79 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5928350 |
tatttgcaatgccatgatttcttatgttt |
5928378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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