View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17329_low_29 (Length: 217)
Name: NF17329_low_29
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 51047861 - 51047899
Alignment:
| Q |
11 |
aggagataagaaactaagaaagggaaagatgttcgcttc |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51047861 |
aggagataagaaactaagaaagggaaagatgttcgcttc |
51047899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 51048029 - 51048065
Alignment:
| Q |
181 |
tcaaatctagaagtaatcatttttgtattcaaggata |
217 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
51048029 |
tcaaatctagaattaatcatttttgtactcaaggata |
51048065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 1775836 - 1775780
Alignment:
| Q |
107 |
gatgaatctaactattttgaaccnnnnnnncttaatttaattatttaagctattcaa |
163 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1775836 |
gatgaatctaactattttgaaccaaaaaaacttaatttaattatttaagctattcaa |
1775780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 1775929 - 1775894
Alignment:
| Q |
14 |
agataagaaactaagaaagggaaagatgttcgcttc |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1775929 |
agataagaaactaagaaagggaaagatgttcgcttc |
1775894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University