View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_31 (Length: 203)
Name: NF17329_low_31
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 19611694 - 19611862
Alignment:
| Q |
17 |
caaaggttcacaagtaaatatagcttcgaaaagttgctccaaaagtttttcatatcttattttcaaaatcatttttgttttgttgaatttccttctttgt |
116 |
Q |
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| T |
19611694 |
caaaggttcacaagtaaatatagcttcgaaaagttgctccaaaattttttcatatcttattttcaaaatcatttttgttttgttgaatttccttctttgt |
19611793 |
T |
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| Q |
117 |
nnnnnnngatactctctctatctcaaaataacgaactctttaatatgtttttctgttttacaataattat |
186 |
Q |
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| T |
19611794 |
aaaaaaagatactcttactatctcaaaataacgaactctttaatatgttttt-tttttcacaataattat |
19611862 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 19609088 - 19609150
Alignment:
| Q |
17 |
caaaggttcacaagtaaatatagcttcgaaaagttgctccaaaagtttttcatatcttatttt |
79 |
Q |
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| T |
19609088 |
caaaggtgcacaagtaaatatagcttccaaaagttgctccaaaagattttcacatcatatttt |
19609150 |
T |
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