View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_4 (Length: 410)
Name: NF17329_low_4
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 2695815 - 2696194
Alignment:
| Q |
19 |
gtagtacactagtatcaatttcgcaaaactgtgatgctttgtggacaagcaaatgtatatgatgtttcaaagatctactacaatgttatcaattgctaat |
118 |
Q |
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| T |
2695815 |
gtagtacactagtatcaatttcgcaaaactgtgatgctttgtggacaagcaaatgtatatgatgtttcaaagatctactacaatgttatcaattgctaat |
2695914 |
T |
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| Q |
119 |
agctgggac--aacggtatgacatgttatgaaaagaaccaaaaacgcgtacaggcgacatcattaatcttccatcataccatcactaccttcaacgtcac |
216 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2695915 |
agctgggacttaatggtatgacatgttatgaaaagaaccaaaaacacgtacaggcgacatcattaatcttccatcataccatcactaccttcaacgtcac |
2696014 |
T |
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| Q |
217 |
taagattatcaaatgcttcatctgatagttccccatctttgctatctttgtcggtgtccatggcatcctcggattctctttcactatcatccgtgtccac |
316 |
Q |
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| T |
2696015 |
ttagattatcaaatgcttcatctgatagttccccatctttgctatctttgtcggtgtccatggcatcctcggattctctttcactatcatccgtgtccac |
2696114 |
T |
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| Q |
317 |
atagataattggcactgtttcaacttcatctacctcctcatcaagcacctaatcaaaagaaaccatgcataaacacaggt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2696115 |
atagataattggcactgtttcaacttcatctacctcctcatcaagcacctattcaaaagaaaccatgcataaacacaggt |
2696194 |
T |
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