View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17329_low_5 (Length: 397)

Name: NF17329_low_5
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17329_low_5
NF17329_low_5
[»] chr3 (12 HSPs)
chr3 (1-180)||(19382770-19382950)
chr3 (243-381)||(19382569-19382707)
chr3 (246-381)||(19394825-19394958)
chr3 (246-381)||(18872080-18872213)
chr3 (107-180)||(19395024-19395097)
chr3 (250-342)||(19439872-19439964)
chr3 (101-168)||(19440046-19440113)
chr3 (247-341)||(25464809-25464903)
chr3 (107-151)||(18872004-18872048)
chr3 (107-151)||(19466086-19466130)
chr3 (1-57)||(18871948-18872003)
chr3 (1-57)||(19395098-19395153)
[»] chr8 (1 HSPs)
chr8 (247-381)||(8461293-8461424)
[»] chr4 (1 HSPs)
chr4 (256-381)||(2708744-2708867)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 19382950 - 19382770
Alignment:
Q  1 cagcaaagtgtttacacaaactcatgttcttaaaccatcctgcataaactaatatgttgatagatnnnnnnn-gtccaaagcacaacattttaaactaaa 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  19382950 cagcaaagtgtctacacaaactcatgttcttaaaccatcctgcataaactaatatgttgatagataaaaaaaagtccaaagcacaacattttaaactaaa 19382851  T
Q  100 attaaggagagagatacatgaggtgtggccaagcccaaagaacaacttacaaaatgaatgtaaccattcactgactattat 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19382850 attaaggagagagatacatgaggtgtggccaagcccaaagaacaacttacaaaatgaatgtaaccattcactgactattat 19382770  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 19382707 - 19382569
Alignment:
Q  243 gtattacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaa 342  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19382707 gtattacaatcacatatgatctcatctcatacaattattaattgttgatatcaaaatattggctctatttggtaaactctatccacgatttggataacaa 19382608  T
Q  343 ggcacaaactgcgacatgcataatctcacctgataaaat 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19382607 ggcacaaactgcgacatgcataatctcacctgataaaat 19382569  T

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Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 246 - 381
Target Start/End: Complemental strand, 19394958 - 19394825
Alignment:
Q  246 ttacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaaggc 345  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||    
T  19394958 ttacaatcacatatgatctcatctcatacaattattaattgttgatatcaaaatatttgctctatttggaaaactctatccacgaattggataacaatgc 19394859  T
Q  346 acaaactgcgacatgcataatctcacctgataaaat 381  Q
    |||||||| |||||||||||  ||||||||||||||    
T  19394858 acaaactgtgacatgcataa--tcacctgataaaat 19394825  T

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Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 246 - 381
Target Start/End: Original strand, 18872080 - 18872213
Alignment:
Q  246 ttacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaaggc 345  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||    
T  18872080 ttacaatcacataagatctcatctcatacaattaataattgttgatatcaaaatattggctcaatttgggaaactctatccacgatttggataacaatgc 18872179  T
Q  346 acaaactgcgacatgcataatctcacctgataaaat 381  Q
    |||||||| |||||||||||  ||||||||||||||    
T  18872180 acaaactgtgacatgcataa--tcacctgataaaat 18872213  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 19395097 - 19395024
Alignment:
Q  107 agagagatacatgaggtgtggccaagcccaaagaacaacttacaaaatgaatgtaaccattcactgactattat 180  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19395097 agagagatacatgaggtgtgcactagcccaaagaacaacttacaaaatgaatgtaaccattccctgactattat 19395024  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 19439964 - 19439872
Alignment:
Q  250 aatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaa 342  Q
    ||||||||||||||||||||||||||| | |||||  | ||||||| |||||||||||||||| ||||| | |||||||||||| ||||||||    
T  19439964 aatcacatatgatctcatctcatacaactcttaattatcgatatcacaatattggctctattttgaaaattatatccacgatttcgataacaa 19439872  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 19440113 - 19440046
Alignment:
Q  101 ttaaggagagagatacatgaggtgtggccaagcccaaagaacaacttacaaaatgaatgtaaccattc 168  Q
    |||||||| |||||||||| ||||||| ||||||||||||||| |||||||||  |||| ||||||||    
T  19440113 ttaaggagtgagatacatgtggtgtggacaagcccaaagaacagcttacaaaactaatgcaaccattc 19440046  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 341
Target Start/End: Complemental strand, 25464903 - 25464809
Alignment:
Q  247 tacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataaca 341  Q
    |||||| ||||||||| ||||||||||||| | || || ||| |||| | |||||||||||||||| ||||| | ||||||| ||||| ||||||    
T  25464903 tacaatgacatatgatatcatctcatacaactttttattgtttatattacaatattggctctattttgaaaattatatccaccatttgcataaca 25464809  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 18872004 - 18872048
Alignment:
Q  107 agagagatacatgaggtgtggccaagcccaaagaacaacttacaa 151  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  18872004 agagagatacatgaggtgtggacaatcccaaagaacaacttacaa 18872048  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 19466130 - 19466086
Alignment:
Q  107 agagagatacatgaggtgtggccaagcccaaagaacaacttacaa 151  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  19466130 agagagatacatgaggtgtggacaatcccaaagaacaacttacaa 19466086  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18871948 - 18872003
Alignment:
Q  1 cagcaaagtgtttacacaaactcatgttcttaaaccatcctgcataaactaatatgt 57  Q
    ||||||||| | ||||||||||| | |||||||||||| ||||||||||||||||||    
T  18871948 cagcaaagtttctacacaaactcttattcttaaaccat-ctgcataaactaatatgt 18872003  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 19395153 - 19395098
Alignment:
Q  1 cagcaaagtgtttacacaaactcatgttcttaaaccatcctgcataaactaatatgt 57  Q
    ||||||||| | || |||||||| | |||||||||||| ||||||||||||||||||    
T  19395153 cagcaaagtttctaaacaaactcttattcttaaaccat-ctgcataaactaatatgt 19395098  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 381
Target Start/End: Complemental strand, 8461424 - 8461293
Alignment:
Q  247 tacaatcacatatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaaggca 346  Q
    |||||||||| ||||||||||||||||||| | ||||| | |||||||| |||||||||||||||| ||||| | ||||||||| ||  |||| || |||    
T  8461424 tacaatcacaaatgatctcatctcatacaactcttaattgctgatatcacaatattggctctatttagaaaattatatccacgactt--ataaaaatgca 8461327  T
Q  347 caaactgcgacatgcataatctcacctgataaaat 381  Q
      | |||| |||||||||||| |||||||||||||    
T  8461326 ggatctgccacatgcataatc-cacctgataaaat 8461293  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 2708744 - 2708867
Alignment:
Q  256 atatgatctcatctcatacaattattaatggttgatatcaaaatattggctctatttggaaaactctatccacgatttggataacaaggcacaaactgcg 355  Q
    |||||||||||||| |||||| | |||||  ||||| | | |||||||||||| ||||||||| |  |||||| ||||| ||||||| |||  ||||||     
T  2708744 atatgatctcatcttatacaactcttaattattgatgtgacaatattggctctctttggaaaattacatccacaatttgcataacaatgcaggaactgcc 2708843  T
Q  356 acatgcataatctcacctgataaaat 381  Q
    ||| ||||||   |||||||||||||    
T  2708844 acacgcataa--ccacctgataaaat 2708867  T

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