View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17329_low_7 (Length: 380)
Name: NF17329_low_7
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 366
Target Start/End: Complemental strand, 53467540 - 53467183
Alignment:
| Q |
22 |
tactatcatttatgtatagatatacacccaatattaattttgcatattccaagaaaaatcgatagaattaataataagggatgtgtttggaaaatgaatg |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53467540 |
tactatcatttatgtatagata--cacccaatattaattttgcatattccaagaaaaatcgatagaattaataataagggatgtgtttggaaaatgaatg |
53467443 |
T |
|
| Q |
122 |
ataaatgtttatcaaaatttgtaaagagatgtacaagataaacatatgttacaaaacgctcttat---------------gagaagcgattttcttttct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
53467442 |
ataaatgtttatcaaaatttgtaaagagatgtacaagataaacatatgttacaaaacgctcttatgattaagaacggagagagaagcgatttgcttttct |
53467343 |
T |
|
| Q |
207 |
tttcactttgtaatgtcgttgttgagtaatgagtgttgtttatgaggagaacggagaatcatccatattgaggcaagagcaaccacatgagttggacacc |
306 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53467342 |
tttcactttgtaatgtcattgttgggtaatgagtgttgtttacgagtagaacggagaatcaaccatattgaggcaagagcaaccacatgagttggacacc |
53467243 |
T |
|
| Q |
307 |
acattttcattcaaaatcataaggcattgggggcttatgcatcctctcacttatatattg |
366 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53467242 |
acattttcattcaaaatcttaaggcattgggggcttatgcatcctctcacttatatattg |
53467183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University