View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17329_low_8 (Length: 350)
Name: NF17329_low_8
Description: NF17329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17329_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 3 - 341
Target Start/End: Complemental strand, 47067392 - 47067054
Alignment:
| Q |
3 |
tgttgagttgaaaccttccggttgagtgattggtctctgatagactagaggacagtttgcctccacaaggtagagattgactctccaatagagtatcagt |
102 |
Q |
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| T |
47067392 |
tgttgagttgaaaccttccggttgagtgattggtctctgataaactagaggacagtttgcctccacaaggtagagattgactctccaatagagtatcagt |
47067293 |
T |
|
| Q |
103 |
tgggtgatcgaaactctgccatatgatgctggaaatattattgttgtcatatagtacaaagttcccagaatcaagcatggaggcagaggaagctcttgta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47067292 |
tgggtgatcgaaactctgccatatgatgctggaaatattattgttgtcatatagtacaaagttcccagaatcaagcatggaggccgaggaagctcttgta |
47067193 |
T |
|
| Q |
203 |
ttagcattaacaataagcttctgttgtccctgttgatctgttagtattattgtacccttcatggtaaattgtagctttacagttgaggttactggagggt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47067192 |
ttagcattaacaataagcttctgttgtccctgttgatctgttagtattattgtacccttcatggtaaattgtagctttacagttgaggttactggagggt |
47067093 |
T |
|
| Q |
303 |
catcacggtttgcagttcatactattgtgttgttcatct |
341 |
Q |
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| T |
47067092 |
catcacggtttgcagtccatactattgtgctgttcatct |
47067054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 3 - 341
Target Start/End: Original strand, 47076932 - 47077270
Alignment:
| Q |
3 |
tgttgagttgaaaccttccggttgagtgattggtctctgatagactagaggacagtttgcctccacaaggtagagattgactctccaatagagtatcagt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
47076932 |
tgttgagttgaaaccttccggttgagtgattggtctctgataaactagaggacagttggcctccacaaggcagagattgactctccaataaagtatcagt |
47077031 |
T |
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| Q |
103 |
tgggtgatcgaaactctgccatatgatgctggaaatattattgttgtcatatagtacaaagttcccagaatcaagcatggaggcagaggaagctcttgta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47077032 |
cgggtgatcgaaactctgccatatgatgctggaaatattatggttgtcatatagtacaaagttcccagaatcaagcatggaggccgaggaagctcttgta |
47077131 |
T |
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| Q |
203 |
ttagcattaacaataagcttctgttgtccctgttgatctgttagtattattgtacccttcatggtaaattgtagctttacagttgaggttactggagggt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47077132 |
ttagcattaacaataagcttctgttgtccctgttgatctgttagtattattgtacccttcatggtaaattgtagctttacagttgaggttactggagggt |
47077231 |
T |
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| Q |
303 |
catcacggtttgcagttcatactattgtgttgttcatct |
341 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |
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| T |
47077232 |
catcacggtttgcagtccatactattgtgttgttcatct |
47077270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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