View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1732R-Insertion-1 (Length: 940)
Name: NF1732R-Insertion-1
Description: NF1732R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1732R-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 2624917 - 2624485
Alignment:
| Q |
8 |
aatgtgaacgccaccttttccaacaaaaaatctatctttaggtatgatatatgtttttgagactacctgattacttttgttgggaaaatcatatcattcc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624917 |
aatgtgaacgccaccttttccaacaaaaaatctatctttaggtatgatatatgtttttgagactacctgattacttttgttgggaaaatcatatcattcc |
2624818 |
T |
|
| Q |
108 |
tacttttataccaccgctctagaagccaaagttatagttttatcggaagttattaaagtgaccatatcaaaaagaatgtatgttgttttgcttgaaattg |
207 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
2624817 |
tacttttctaccaccgctctagaagccaaagttatagttttatcggaagttattaaagtgaccatatcaaacagaatgtatgttgttttgtttgaaattg |
2624718 |
T |
|
| Q |
208 |
atttcaaaacattatctcttgctcttgccaccaacaatgccccccttaacgagtttggtgaccatatatctcaatgtacaattttcttatttaatagaaa |
307 |
Q |
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| T |
2624717 |
atttcaaaacattatctcttgctcttgccaccaacaatgccccccttaacgagtttggtgaccatatatctc-atgtacaagtttcttatttaatagaaa |
2624619 |
T |
|
| Q |
308 |
ttactttataatgtcataagttcggcgaaaaataaataaggttttccatagtattgatattcttattccatcctaaccccctatattctattactagtta |
407 |
Q |
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| T |
2624618 |
ttactttataatgtcataagttcggcggaaaataaataaggttttccgtagtattgatattcttattccaccctaaccccctatattctattactagtta |
2624519 |
T |
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| Q |
408 |
tttaacccgtgcattgtgggttttattagaacat |
441 |
Q |
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| T |
2624518 |
tttaacccgtgcattgcgggttttattagaacat |
2624485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 511 - 702
Target Start/End: Complemental strand, 2624444 - 2624254
Alignment:
| Q |
511 |
caaatttgaggattatttaaaatcatgaatattatttatttataaaataggagannnnnnnaagaggaacttttacaatgacacatatagatttgacttc |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2624444 |
caaatttgaggattatttaaaatcatgaatattatttatttataaaataggagaattttttaagaggaacttttacaatgacacatatagatttgacttc |
2624345 |
T |
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| Q |
611 |
aacaataagaattcaacaaaatatcaacaataaaaaatttaacaaatatattacattcatattcaagtttatataccatctcaaaatcatct |
702 |
Q |
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| T |
2624344 |
aacaataagaattcaacaaa-tatcaacaataaagaatttaacaaatatattacattcatattcaagtttatataccatctcaaaatcatct |
2624254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 741 - 920
Target Start/End: Complemental strand, 2620934 - 2620752
Alignment:
| Q |
741 |
tcttcatagactactctgtagcttatttgttgtgttaatctggagatcttttgatgcatgtttttcatttgattgacatatatggctgggtttcattc-g |
839 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | |
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| T |
2620934 |
tcttcatagactactctgtagtttatttgttgtgttaatctggagatcttttgatgcatgtttttcatttgattgacatatatggctggtttccattcgg |
2620835 |
T |
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| Q |
840 |
tgctttctctactcatgactggatactctttg-ttgagattccaatcttgattagatataatgg-tttgagataagatccgag |
920 |
Q |
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| T |
2620834 |
tgctttctctactcatgactggataccctttgtttgagattccgatcttgattagatataatggttttgagataagatccgag |
2620752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 741 - 920
Target Start/End: Complemental strand, 41617104 - 41616922
Alignment:
| Q |
741 |
tcttcatagactactctgtagcttatttgttgtgttaatctggagatcttttgatgcatgtttttcatttgattgacatatatggctgggtttcattc-g |
839 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| | |
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| T |
41617104 |
tcttcatagactactctgtagtttatttgctgtgttaatctggagatcttttgatgcatgtttttcatttgattgacatatacggctggtttccattcgg |
41617005 |
T |
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| Q |
840 |
tgctttctctactcatgactggatactctttg-ttgagattccaatcttgattagatataatgg-tttgagataagatccgag |
920 |
Q |
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| T |
41617004 |
tgctttctctactcatgactggatactctttgtttgagattccaatcttgattagatataatggttttgagataagatccgag |
41616922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 705 - 744
Target Start/End: Complemental strand, 2620924 - 2620885
Alignment:
| Q |
705 |
ctactctgtagtttatttgttgtgttaatctggagatctt |
744 |
Q |
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| T |
2620924 |
ctactctgtagtttatttgttgtgttaatctggagatctt |
2620885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 705 - 744
Target Start/End: Complemental strand, 41617094 - 41617055
Alignment:
| Q |
705 |
ctactctgtagtttatttgttgtgttaatctggagatctt |
744 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
41617094 |
ctactctgtagtttatttgctgtgttaatctggagatctt |
41617055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 740 - 920
Target Start/End: Original strand, 22426410 - 22426592
Alignment:
| Q |
740 |
atcttcatagactactctgtagcttatttgttgtgttaatctggagatcttttgatgcatgtttttcatttgattgacatatatggctgggtttcattc- |
838 |
Q |
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||||||||| |||||||||||| |||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
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| T |
22426410 |
atcttcataaactactctgtagtttatctgctgtgtcaatctggaaatcttttgatgcatgtttttcatttgattgacatatacggctggttcccattcg |
22426509 |
T |
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| Q |
839 |
gtgctttctctactcatgactggatactctttg-ttgagattccaatcttgattagatataatggtttgagataagatccgag |
920 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
22426510 |
gtgttttctctactcatgactggatactctttgtttgagattccaatcttgataagatacattggtttgagataagatccgag |
22426592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 741 - 920
Target Start/End: Complemental strand, 4717349 - 4717167
Alignment:
| Q |
741 |
tcttcatagactactctgtagcttatttgttgtgttaatctggagatcttttgatgcatgtttttcatttgattgacatatatggctgggtttcattc-g |
839 |
Q |
| |
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||||||||||||||||||||| |||| || ||| | |||||||| |||||||||||||| |||||||||||||||| ||||| |||||| || ||||| |
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| T |
4717349 |
tcttcatagactactctgtagtttatctgctgtatcaatctggaaatcttttgatgcatatttttcatttgattgatatatacggctggtttccattcaa |
4717250 |
T |
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| Q |
840 |
tgctttctctactcatgactggatactctttg-ttgagattccaatcttgattagatataatgg-tttgagataagatccgag |
920 |
Q |
| |
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|||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| | ||| |||||||||||||||||| |
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| T |
4717249 |
tgctttctctcctcatgactggatagtctttgtttgagattccaatcttgattagatacattggttttgagataagatccgag |
4717167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 28000485 - 28000388
Alignment:
| Q |
160 |
ttaaagtgaccatatcaaaaagaatgtatgttgttttgcttgaaattgatttcaaaacattatctcttgctcttgccaccaacaatgccccccttaac |
257 |
Q |
| |
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|||||||| ||||||||| ||||| ||||||||||| |||||| ||||| |||||| |||| | |||||| |||||||||||||| || |||||| |
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| T |
28000485 |
ttaaagtggtcatatcaaatggaatgcatgttgttttgtttgaaactgattccaaaactttatttgatgctctcgccaccaacaatgctccacttaac |
28000388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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